RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 RELBQ01201 579 aa7.56□□□□□ -1.2
SS18-220ENST00000582092 SPINK9Q5DT21 86 aa7.56□□□□□ -1.2
SS18-220ENST00000582092 UQCC3Q6UW78 93 aa7.56□□□□□ -1.2
SS18-220ENST00000582092 IL34Q6ZMJ4 242 aa7.56□□□□□ -1.2
SS18-220ENST00000582092 Q6ZRG5 221 aa7.56□□□□□ -1.2
SS18-220ENST00000582092 ZNF429Q86V71 674 aa7.56□□□□□ -1.2
SS18-220ENST00000582092 BEND2Q8NDZ0 799 aa7.56□□□□□ -1.2
SS18-220ENST00000582092 OR4A5Q8NH83 315 aa7.56□□□□□ -1.2
SS18-220ENST00000582092 FAM213BQ8TBF2 198 aa7.56□□□□□ -1.2
SS18-220ENST00000582092 PIMREGQ9BSJ6 248 aa7.56□□□□□ -1.2
SS18-220ENST00000582092 TMEM147Q9BVK8 224 aa7.56□□□□□ -1.2
SS18-220ENST00000582092 REG4Q9BYZ8 158 aa7.56□□□□□ -1.2
SS18-220ENST00000582092 MS4A7Q9GZW8 240 aaPredicted RBP7.56□□□□□ -1.2
SS18-220ENST00000582092 ARV1Q9H2C2 271 aa7.56□□□□□ -1.2
SS18-220ENST00000582092 TREM1Q9NP99 234 aa7.56□□□□□ -1.2
SS18-220ENST00000582092 PARP11Q9NR21 331 aa7.56□□□□□ -1.2
SS18-220ENST00000582092 MMP26Q9NRE1 261 aa7.56□□□□□ -1.2
SS18-220ENST00000582092 UQCC1Q9NVA1 299 aa7.56□□□□□ -1.2
SS18-220ENST00000582092 BET1LQ9NYM9 111 aa7.56□□□□□ -1.2
SS18-220ENST00000582092 TCF19Q9Y242 345 aa7.56□□□□□ -1.2
SS18-220ENST00000582092 FOXA2Q9Y261 457 aaPredicted RBP7.56□□□□□ -1.2
SS18-220ENST00000582092 FBXO7Q9Y3I1 522 aa7.56□□□□□ -1.2
SS18-220ENST00000582092 DSCAML1Q8TD84 2053 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 MAP1AP78559 2803 aaPredicted RBP7.55□□□□□ -1.2
SS18-220ENST00000582092 MFSD2BA6NFX1 497 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 H0YJW9 148 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 BUB1B-PAK6H3BSN5 160 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 FOXH1O75593 365 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 IGHV4-39P01824 125 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 SLC25A16P16260 332 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 ATP6V0CP27449 155 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 HTR1DP28221 377 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 SUB1P53999 127 aaKnown RBP eCLIP7.55□□□□□ -1.2
SS18-220ENST00000582092 ATP5IP56385 69 aaPredicted RBP7.55□□□□□ -1.2
SS18-220ENST00000582092 PLGLAQ15195 96 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 POU2AF1Q16633 256 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 HLA-DRB5Q30154 266 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 TMEM177Q53S58 311 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 UTF1Q5T230 341 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 PXDC1Q5TGL8 231 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 TMEM14EPQ6UXP3 125 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 DPPA3Q6W0C5 159 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 C1orf122Q6ZSJ8 110 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 COMMD1Q8N668 190 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 LY6G5BQ8NDX9 201 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 OR5AN1Q8NGI8 311 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 OR1L8Q8NGR8 309 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 FAM168AQ92567 244 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 ZDHHC16Q969W1 377 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 NABP2Q9BQ15 211 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 PBDC1Q9BVG4 233 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 GSX1Q9H4S2 264 aaPredicted RBP7.55□□□□□ -1.2
SS18-220ENST00000582092 ZNRD1Q9P1U0 126 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 ZNF257Q9Y2Q1 563 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 CR1P17927 2039 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 ABCA1O95477 2261 aa7.55□□□□□ -1.2
SS18-220ENST00000582092 HIVEP2P31629 2446 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 NAV3Q8IVL0 2385 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 UBE2L5PA0A1B0GUS4 154 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 A0A1W2PN81 502 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 RNF223E7ERA6 249 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 NDUFS8O00217 210 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 NDUFS7O75251 213 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 FCN3O75636 299 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 HBE1P02100 147 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 H2AFB1P0C5Y9 115 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 FAM157CP0CG43 387 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 SAA1P0DJI8 122 aaPredicted RBP7.54□□□□□ -1.2
SS18-220ENST00000582092 FGF7P21781 194 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 CHRNA7P36544 502 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 ZNF137PP52743 207 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 RPL8P62917 257 aaKnown RBP7.54□□□□□ -1.2
SS18-220ENST00000582092 PJVKQ0ZLH3 352 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 RAB31Q13636 194 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 PEA15Q15121 130 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 LRRC75BQ2VPJ9 315 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 ETV3LQ6ZN32 361 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 C1orf229Q6ZS94 237 aaPredicted RBP7.54□□□□□ -1.2
SS18-220ENST00000582092 STPG2Q8N412 459 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 KIR3DL3Q8N743 410 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 ZNF525Q8N782 197 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 LFNGQ8NES3 379 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 OR5B3Q8NH48 314 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 OR4C12Q96R67 309 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 DPM3Q9P2X0 92 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 KPTNQ9Y664 436 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 CSMD1Q96PZ7 3565 aa7.54□□□□□ -1.2
SS18-220ENST00000582092 MTORP42345 2549 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 TRAV3A0A0B4J244 114 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 IGHV1-3A0A0C4DH29 117 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 C22orf46C9J442 243 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 LY6G6DO95868 133 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 IGHV2-5P01817 119 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 MBP02144 154 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 IGKV1-16P04430 117 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 PRTN3P24158 256 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 NPY1RP25929 384 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 LCN2P80188 198 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 SERF2P84101 59 aa7.53□□□□□ -1.2
SS18-220ENST00000582092 TOR2AQ5JU69 321 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms