RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 VAMP8Q9BV40 100 aa8.92□□□□□ -0.98
CCDC40-207ENST00000572253 HINT2Q9BX68 163 aa8.92□□□□□ -0.98
CCDC40-207ENST00000572253 TMEM167BQ9NRX6 74 aa8.92□□□□□ -0.98
CCDC40-207ENST00000572253 SLC45A2Q9UMX9 530 aa8.92□□□□□ -0.98
CCDC40-207ENST00000572253 YTHDF2Q9Y5A9 579 aaKnown RBP8.92□□□□□ -0.98
CCDC40-207ENST00000572253 OR4P4Q8NGL7 312 aa8.91□□□□□ -0.98
CCDC40-207ENST00000572253 RIF1Q5UIP0 2472 aaKnown RBP8.91□□□□□ -0.98
CCDC40-207ENST00000572253 SVILO95425 2214 aa8.91□□□□□ -0.98
CCDC40-207ENST00000572253 TRGV10A0A0A0MS01 117 aa8.91□□□□□ -0.98
CCDC40-207ENST00000572253 IER3P46695 156 aa8.91□□□□□ -0.98
CCDC40-207ENST00000572253 GNG4P50150 75 aa8.91□□□□□ -0.98
CCDC40-207ENST00000572253 EFNB3Q15768 340 aa8.91□□□□□ -0.98
CCDC40-207ENST00000572253 COX19Q49B96 90 aa8.91□□□□□ -0.98
CCDC40-207ENST00000572253 WDR73Q6P4I2 378 aa8.91□□□□□ -0.98
CCDC40-207ENST00000572253 CD177Q8N6Q3 437 aa8.91□□□□□ -0.98
CCDC40-207ENST00000572253 SIGLECL1Q8N7X8 197 aa8.91□□□□□ -0.98
CCDC40-207ENST00000572253 SFXN3Q9BWM7 321 aa8.91□□□□□ -0.98
CCDC40-207ENST00000572253 OPN3Q9H1Y3 402 aaPredicted RBP8.91□□□□□ -0.98
CCDC40-207ENST00000572253 ZNF586Q9NXT0 402 aa8.91□□□□□ -0.98
CCDC40-207ENST00000572253 SNURFLB1AK76 121 aa8.91□□□□□ -0.98
CCDC40-207ENST00000572253 RPL39P5Q59GN2 51 aa8.91□□□□□ -0.98
CCDC40-207ENST00000572253 MMD2Q8IY49 270 aa8.91□□□□□ -0.98
CCDC40-207ENST00000572253 C1orf162Q8NEQ5 155 aaPredicted RBP8.91□□□□□ -0.98
CCDC40-207ENST00000572253 C11orf52Q96A22 123 aa8.91□□□□□ -0.98
CCDC40-207ENST00000572253 CBY3A6NI87 242 aa8.9□□□□□ -0.98
CCDC40-207ENST00000572253 SLC17A3O00476 420 aa8.9□□□□□ -0.98
CCDC40-207ENST00000572253 NUPR1O60356 82 aa8.9□□□□□ -0.98
CCDC40-207ENST00000572253 SERF1AO75920 110 aa8.9□□□□□ -0.98
CCDC40-207ENST00000572253 RAB4AP20338 218 aa8.9□□□□□ -0.98
CCDC40-207ENST00000572253 TDGF1P3P51864 188 aa8.9□□□□□ -0.98
CCDC40-207ENST00000572253 HSPE1P61604 102 aaKnown RBP8.9□□□□□ -0.98
CCDC40-207ENST00000572253 HOXA4Q00056 320 aaPredicted RBP8.9□□□□□ -0.98
CCDC40-207ENST00000572253 TIGITQ495A1 244 aa8.9□□□□□ -0.98
CCDC40-207ENST00000572253 ALKBH2Q6NS38 261 aa8.9□□□□□ -0.98
CCDC40-207ENST00000572253 OR2Z1Q8NG97 314 aa8.9□□□□□ -0.98
CCDC40-207ENST00000572253 EAF1Q96JC9 268 aaPredicted RBP8.9□□□□□ -0.98
CCDC40-207ENST00000572253 PLEKHA3Q9HB20 300 aa8.9□□□□□ -0.98
CCDC40-207ENST00000572253 DUSP13Q9UII6 198 aa8.9□□□□□ -0.98
CCDC40-207ENST00000572253 TNFSF13O75888 250 aa8.9□□□□□ -0.98
CCDC40-207ENST00000572253 IGKV3-15P01624 115 aa8.9□□□□□ -0.98
CCDC40-207ENST00000572253 MT-ND6P03923 174 aa8.9□□□□□ -0.98
CCDC40-207ENST00000572253 RPLP1P05386 114 aaKnown RBP8.9□□□□□ -0.98
CCDC40-207ENST00000572253 RNFT1Q5M7Z0 435 aa8.9□□□□□ -0.98
CCDC40-207ENST00000572253 C1orf174Q8IYL3 243 aa8.9□□□□□ -0.98
CCDC40-207ENST00000572253 C20orf144Q9BQM9 153 aa8.9□□□□□ -0.98
CCDC40-207ENST00000572253 LSM4Q9Y4Z0 139 aaKnown RBP8.9□□□□□ -0.98
CCDC40-207ENST00000572253 MED13Q9UHV7 2174 aa8.9□□□□□ -0.98
CCDC40-207ENST00000572253 C15orf61A6NNL5 157 aa8.9□□□□□ -0.99
CCDC40-207ENST00000572253 ZNF25P17030 456 aaPredicted RBP8.9□□□□□ -0.99
CCDC40-207ENST00000572253 PCP4P48539 62 aa8.9□□□□□ -0.99
CCDC40-207ENST00000572253 FAM90A1Q86YD7 464 aa8.9□□□□□ -0.99
CCDC40-207ENST00000572253 ADTRPQ96IZ2 230 aa8.9□□□□□ -0.99
CCDC40-207ENST00000572253 MIEN1Q9BRT3 115 aa8.9□□□□□ -0.99
CCDC40-207ENST00000572253 CLCF1Q9UBD9 225 aa8.9□□□□□ -0.99
CCDC40-207ENST00000572253 ARL2-SNX15V9GYD0 113 aa8.9□□□□□ -0.99
CCDC40-207ENST00000572253 TRAV3A0A0B4J244 114 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 HELTA6NFD8 242 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 PRSS46E5RG02 174 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 WISP2O76076 250 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 CECR9P0C854 216 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 AREGP15514 252 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 LGALS4P56470 323 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 SLC25A10Q9UBX3 287 aaPredicted RBP8.89□□□□□ -0.99
CCDC40-207ENST00000572253 IL19Q9UHD0 177 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 ESDP10768 282 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 TAS2R45P59539 299 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 PSG5Q15238 335 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 TRIP6Q15654 476 aaKnown RBP8.89□□□□□ -0.99
CCDC40-207ENST00000572253 HLA-DRB5Q30154 266 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 SPATA31B1PQ5VZV4 182 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 ARRDC1-AS1Q9H2J1 176 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 SEPSECSQ9HD40 501 aaKnown RBP8.89□□□□□ -0.99
CCDC40-207ENST00000572253 TECRQ9NZ01 308 aaKnown RBP8.89□□□□□ -0.99
CCDC40-207ENST00000572253 NAT8BQ9UHF3 227 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 ACTL6BO94805 426 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 IGHV3-13P01766 116 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 IGHV3-7P01780 117 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 Q0VG73 95 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 Q6ZWC4 215 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 OR8I2Q8N0Y5 310 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 VN1R17PQ8TDU5 208 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 CALYQ9NYX4 217 aa8.89□□□□□ -0.99
CCDC40-207ENST00000572253 PROP1O75360 226 aa8.88□□□□□ -0.99
CCDC40-207ENST00000572253 CA2P00918 260 aa8.88□□□□□ -0.99
CCDC40-207ENST00000572253 ARSJQ5FYB0 599 aaPredicted RBP8.88□□□□□ -0.99
CCDC40-207ENST00000572253 TEX43Q6ZNM6 134 aa8.88□□□□□ -0.99
CCDC40-207ENST00000572253 TMPRSS7Q7RTY8 843 aa8.88□□□□□ -0.99
CCDC40-207ENST00000572253 Q8TCH9 128 aa8.88□□□□□ -0.99
CCDC40-207ENST00000572253 VPS25Q9BRG1 176 aa8.88□□□□□ -0.99
CCDC40-207ENST00000572253 GNB1LQ9BYB4 327 aa8.88□□□□□ -0.99
CCDC40-207ENST00000572253 IFI27L2Q9H2X8 130 aa8.88□□□□□ -0.99
CCDC40-207ENST00000572253 PAM16Q9Y3D7 125 aa8.88□□□□□ -0.99
CCDC40-207ENST00000572253 SRRM5B3KS81 715 aa8.88□□□□□ -0.99
CCDC40-207ENST00000572253 F2RL2O00254 374 aa8.88□□□□□ -0.99
CCDC40-207ENST00000572253 BRS3P32247 399 aa8.88□□□□□ -0.99
CCDC40-207ENST00000572253 RTL8BQ17RB0 113 aa8.88□□□□□ -0.99
CCDC40-207ENST00000572253 MBNL2Q5VZF2 373 aaKnown RBP8.88□□□□□ -0.99
CCDC40-207ENST00000572253 GCSAMQ8N6F7 178 aa8.88□□□□□ -0.99
CCDC40-207ENST00000572253 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.88□□□□□ -0.99
CCDC40-207ENST00000572253 CDX2Q99626 313 aaPredicted RBP8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms