RNA–Protein interactions for RNA: ENST00000568301.1

COMMD4-223, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 666 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-223	ENST00000568301		S4R3C0	116 aa		11.25	□□□□□ -0.61
COMMD4-223	ENST00000568301	IGLV11-55	A0A075B6I3	123 aa		11.24	□□□□□ -0.61
COMMD4-223	ENST00000568301	TMEM235	A6NFC5	223 aa		11.24	□□□□□ -0.61
COMMD4-223	ENST00000568301	NOTO	A8MTQ0	251 aa		11.24	□□□□□ -0.61
COMMD4-223	ENST00000568301	HLA-G	P17693	338 aa		11.24	□□□□□ -0.61
COMMD4-223	ENST00000568301	FGF9	P31371	208 aa	Predicted RBP	11.24	□□□□□ -0.61
COMMD4-223	ENST00000568301	ELL	P55199	621 aa	Predicted RBP	11.24	□□□□□ -0.61
COMMD4-223	ENST00000568301	GNG2	P59768	71 aa		11.24	□□□□□ -0.61
COMMD4-223	ENST00000568301	MRPL27	Q9P0M9	148 aa	Known RBP	11.24	□□□□□ -0.61
COMMD4-223	ENST00000568301	RBFOX2	O43251	390 aa	Known RBP eCLIP	11.23	□□□□□ -0.61
COMMD4-223	ENST00000568301	SSX5	O60225	188 aa		11.23	□□□□□ -0.61
COMMD4-223	ENST00000568301	SCAF4	O95104	1147 aa	Known RBP	11.23	□□□□□ -0.61
COMMD4-223	ENST00000568301	TM4SF20	Q53R12	229 aa		11.23	□□□□□ -0.61
COMMD4-223	ENST00000568301	SSX9	Q7RTT3	188 aa		11.23	□□□□□ -0.61
COMMD4-223	ENST00000568301	TPRA1	Q86W33	373 aa		11.23	□□□□□ -0.61
COMMD4-223	ENST00000568301	WFDC3	Q8IUB2	231 aa		11.23	□□□□□ -0.61
COMMD4-223	ENST00000568301	ZBTB34	Q8NCN2	500 aa		11.23	□□□□□ -0.61
COMMD4-223	ENST00000568301	SRSF8	Q9BRL6	282 aa	Known RBP	11.23	□□□□□ -0.61
COMMD4-223	ENST00000568301	SELENOK	Q9Y6D0	94 aa		11.23	□□□□□ -0.61
COMMD4-223	ENST00000568301	CGB1	A6NKQ9	187 aa		11.22	□□□□□ -0.61
COMMD4-223	ENST00000568301	MRPS14	O60783	128 aa	Known RBP	11.22	□□□□□ -0.61
COMMD4-223	ENST00000568301	OR2B8P	P59922	312 aa		11.22	□□□□□ -0.61
COMMD4-223	ENST00000568301	TIMM50	Q3ZCQ8	353 aa		11.22	□□□□□ -0.61
COMMD4-223	ENST00000568301	BTNL8	Q6UX41	500 aa		11.22	□□□□□ -0.61
COMMD4-223	ENST00000568301	UNQ9165/PRO28630	Q6UXU0	137 aa		11.22	□□□□□ -0.61
COMMD4-223	ENST00000568301	RBPMS2	Q6ZRY4	209 aa	Known RBP	11.22	□□□□□ -0.61
COMMD4-223	ENST00000568301	CNBD2	Q96M20	576 aa		11.22	□□□□□ -0.61
COMMD4-223	ENST00000568301	GPHA2	Q96T91	129 aa		11.22	□□□□□ -0.61
COMMD4-223	ENST00000568301	CCL28	Q9NRJ3	127 aa		11.22	□□□□□ -0.61
COMMD4-223	ENST00000568301	TXNL4B	Q9NX01	149 aa	Known RBP	11.22	□□□□□ -0.61
COMMD4-223	ENST00000568301	THYN1	Q9P016	225 aa		11.22	□□□□□ -0.61
COMMD4-223	ENST00000568301	TP53TG1	Q9Y2A0	90 aa		11.22	□□□□□ -0.61
COMMD4-223	ENST00000568301	UFC1	Q9Y3C8	167 aa		11.22	□□□□□ -0.61
COMMD4-223	ENST00000568301	PCLO	Q9Y6V0	5065 aa		11.22	□□□□□ -0.61
COMMD4-223	ENST00000568301	SMIM30	A4D0T7	59 aa		11.21	□□□□□ -0.61
COMMD4-223	ENST00000568301	MFSD2B	A6NFX1	497 aa		11.21	□□□□□ -0.61
COMMD4-223	ENST00000568301	REG1A	P05451	166 aa		11.21	□□□□□ -0.61
COMMD4-223	ENST00000568301	FGF2	P09038	288 aa		11.21	□□□□□ -0.61
COMMD4-223	ENST00000568301	MYOD1	P15172	320 aa		11.21	□□□□□ -0.61
COMMD4-223	ENST00000568301	PTBP1	P26599	531 aa	Known RBP eCLIP	11.21	□□□□□ -0.61
COMMD4-223	ENST00000568301	FCGR2C	P31995	323 aa		11.21	□□□□□ -0.61
COMMD4-223	ENST00000568301	TAS2R31	P59538	309 aa		11.21	□□□□□ -0.61
COMMD4-223	ENST00000568301	POU2AF1	Q16633	256 aa		11.21	□□□□□ -0.61
COMMD4-223	ENST00000568301	ZNF585B	Q52M93	769 aa		11.21	□□□□□ -0.61
COMMD4-223	ENST00000568301	PLET1	Q6UQ28	207 aa		11.21	□□□□□ -0.61
COMMD4-223	ENST00000568301		Q6ZWC4	215 aa		11.21	□□□□□ -0.61
COMMD4-223	ENST00000568301	SPAG16	Q8N0X2	631 aa		11.21	□□□□□ -0.61
COMMD4-223	ENST00000568301	OR2C3	Q8N628	320 aa		11.21	□□□□□ -0.61
COMMD4-223	ENST00000568301	BEST4	Q8NFU0	473 aa		11.21	□□□□□ -0.61
COMMD4-223	ENST00000568301	OR1L6	Q8NGR2	347 aa		11.21	□□□□□ -0.61
COMMD4-223	ENST00000568301	ZNF502	Q8TBZ5	544 aa		11.21	□□□□□ -0.61
COMMD4-223	ENST00000568301	SECTM1	Q8WVN6	248 aa		11.21	□□□□□ -0.61
COMMD4-223	ENST00000568301	C5orf66	Q9H5L9	145 aa		11.21	□□□□□ -0.61
COMMD4-223	ENST00000568301	HRASLS	Q9HDD0	168 aa		11.21	□□□□□ -0.61
COMMD4-223	ENST00000568301	DAPK2	Q9UIK4	370 aa		11.21	□□□□□ -0.61
COMMD4-223	ENST00000568301	IGLC7	A0M8Q6	106 aa		11.2	□□□□□ -0.62
COMMD4-223	ENST00000568301	UPK2	O00526	184 aa		11.2	□□□□□ -0.62
COMMD4-223	ENST00000568301	TNFSF12	O43508	249 aa		11.2	□□□□□ -0.62
COMMD4-223	ENST00000568301	HPRT1	P00492	218 aa		11.2	□□□□□ -0.62
COMMD4-223	ENST00000568301	GPR183	P32249	361 aa		11.2	□□□□□ -0.62
COMMD4-223	ENST00000568301	BMI1	P35226	326 aa		11.2	□□□□□ -0.62
COMMD4-223	ENST00000568301	APOC4	P55056	127 aa		11.2	□□□□□ -0.62
COMMD4-223	ENST00000568301	ARPC4	P59998	168 aa		11.2	□□□□□ -0.62
COMMD4-223	ENST00000568301	TNFRSF9	Q07011	255 aa		11.2	□□□□□ -0.62
COMMD4-223	ENST00000568301	UBE2U	Q5VVX9	321 aa		11.2	□□□□□ -0.62
COMMD4-223	ENST00000568301	SLC38A6	Q8IZM9	456 aa		11.2	□□□□□ -0.62
COMMD4-223	ENST00000568301	OR13F1	Q8NGS4	319 aa		11.2	□□□□□ -0.62
COMMD4-223	ENST00000568301	VN1R17P	Q8TDU5	208 aa		11.2	□□□□□ -0.62
COMMD4-223	ENST00000568301	SPAG8	Q99932	426 aa	Predicted RBP	11.2	□□□□□ -0.62
COMMD4-223	ENST00000568301	ZNF436	Q9C0F3	470 aa	Predicted RBP	11.2	□□□□□ -0.62
COMMD4-223	ENST00000568301	COMMD5	Q9GZQ3	224 aa		11.2	□□□□□ -0.62
COMMD4-223	ENST00000568301	RHBDL2	Q9NX52	303 aa		11.2	□□□□□ -0.62
COMMD4-223	ENST00000568301	CXorf65	A6NEN9	183 aa		11.19	□□□□□ -0.62
COMMD4-223	ENST00000568301	NUPR2	A6NF83	97 aa		11.19	□□□□□ -0.62
COMMD4-223	ENST00000568301	UBE2C	O00762	179 aa		11.19	□□□□□ -0.62
COMMD4-223	ENST00000568301	CYB5B	O43169	146 aa		11.19	□□□□□ -0.62
COMMD4-223	ENST00000568301	PPY	P01298	95 aa		11.19	□□□□□ -0.62
COMMD4-223	ENST00000568301	NQO2	P16083	231 aa		11.19	□□□□□ -0.62
COMMD4-223	ENST00000568301	ATF4	P18848	351 aa	Predicted RBP	11.19	□□□□□ -0.62
COMMD4-223	ENST00000568301	SCAND1	P57086	179 aa		11.19	□□□□□ -0.62
COMMD4-223	ENST00000568301	GABARAPL2	P60520	117 aa		11.19	□□□□□ -0.62
COMMD4-223	ENST00000568301	CATR1	Q13166	79 aa		11.19	□□□□□ -0.62
COMMD4-223	ENST00000568301	PMS2P11	Q13670	270 aa		11.19	□□□□□ -0.62
COMMD4-223	ENST00000568301	SFXN4	Q6P4A7	337 aa		11.19	□□□□□ -0.62
COMMD4-223	ENST00000568301	HOGA1	Q86XE5	327 aa		11.19	□□□□□ -0.62
COMMD4-223	ENST00000568301	LGALS14	Q8TCE9	139 aa		11.19	□□□□□ -0.62
COMMD4-223	ENST00000568301	CD300LF	Q8TDQ1	290 aa		11.19	□□□□□ -0.62
COMMD4-223	ENST00000568301	VPS13D	Q5THJ4	4388 aa		11.18	□□□□□ -0.62
COMMD4-223	ENST00000568301	TRAV3	A0A0B4J244	114 aa		11.18	□□□□□ -0.62
COMMD4-223	ENST00000568301		A0A0J9YWU9	116 aa		11.18	□□□□□ -0.62
COMMD4-223	ENST00000568301	SULT1C2	O00338	296 aa		11.18	□□□□□ -0.62
COMMD4-223	ENST00000568301	TSPAN4	O14817	238 aa		11.18	□□□□□ -0.62
COMMD4-223	ENST00000568301	SPRY2	O43597	315 aa		11.18	□□□□□ -0.62
COMMD4-223	ENST00000568301	THOC7	Q6I9Y2	204 aa	Known RBP	11.18	□□□□□ -0.62
COMMD4-223	ENST00000568301	ZNF773	Q6PK81	442 aa		11.18	□□□□□ -0.62
COMMD4-223	ENST00000568301	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	11.18	□□□□□ -0.62
COMMD4-223	ENST00000568301	GIMAP1	Q8WWP7	306 aa		11.18	□□□□□ -0.62
COMMD4-223	ENST00000568301	ATP6V0B	Q99437	205 aa		11.18	□□□□□ -0.62
COMMD4-223	ENST00000568301	QTRT1	Q9BXR0	403 aa	Known RBP	11.18	□□□□□ -0.62
COMMD4-223	ENST00000568301	SLC5A7	Q9GZV3	580 aa		11.18	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms