RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 TM2D3Q9BRN9 247 aa11.27□□□□□ -0.61
CLN3-213ENST00000565047 AIFM2Q9BRQ8 373 aa11.27□□□□□ -0.61
CLN3-213ENST00000565047 ZNF2Q9BSG1 426 aaPredicted RBP11.27□□□□□ -0.61
CLN3-213ENST00000565047 VCX3AQ9NNX9 186 aa11.27□□□□□ -0.61
CLN3-213ENST00000565047 IFT46Q9NQC8 304 aa11.27□□□□□ -0.61
CLN3-213ENST00000565047 FBXL7Q9UJT9 491 aa11.27□□□□□ -0.61
CLN3-213ENST00000565047 STARD9Q9P2P6 4700 aa11.27□□□□□ -0.61
CLN3-213ENST00000565047 PPP5D1E7EU14 171 aa11.26□□□□□ -0.61
CLN3-213ENST00000565047 H0Y980 276 aa11.26□□□□□ -0.61
CLN3-213ENST00000565047 S1PR2O95136 353 aa11.26□□□□□ -0.61
CLN3-213ENST00000565047 APOA1P02647 267 aa11.26□□□□□ -0.61
CLN3-213ENST00000565047 EDN2P20800 178 aa11.26□□□□□ -0.61
CLN3-213ENST00000565047 CATR1Q13166 79 aa11.26□□□□□ -0.61
CLN3-213ENST00000565047 CTF1Q16619 201 aa11.26□□□□□ -0.61
CLN3-213ENST00000565047 TATDN3Q17R31 274 aa11.26□□□□□ -0.61
CLN3-213ENST00000565047 OR51H1Q8NH63 302 aa11.26□□□□□ -0.61
CLN3-213ENST00000565047 NAA50Q9GZZ1 169 aaKnown RBP11.26□□□□□ -0.61
CLN3-213ENST00000565047 FXYD6Q9H0Q3 95 aa11.26□□□□□ -0.61
CLN3-213ENST00000565047 TMEM140Q9NV12 185 aa11.26□□□□□ -0.61
CLN3-213ENST00000565047 CSMD3Q7Z407 3707 aa11.25□□□□□ -0.61
CLN3-213ENST00000565047 LGALS9O00182 355 aa11.25□□□□□ -0.61
CLN3-213ENST00000565047 HLA-AP01891 365 aaKnown RBP11.25□□□□□ -0.61
CLN3-213ENST00000565047 REG1AP05451 166 aa11.25□□□□□ -0.61
CLN3-213ENST00000565047 ELK1P19419 428 aa11.25□□□□□ -0.61
CLN3-213ENST00000565047 F2RP25116 425 aa11.25□□□□□ -0.61
CLN3-213ENST00000565047 HRH1P35367 487 aa11.25□□□□□ -0.61
CLN3-213ENST00000565047 FAM209BQ5JX69 171 aa11.25□□□□□ -0.61
CLN3-213ENST00000565047 GPHB5Q86YW7 130 aa11.25□□□□□ -0.61
CLN3-213ENST00000565047 CD300LFQ8TDQ1 290 aa11.25□□□□□ -0.61
CLN3-213ENST00000565047 RCHY1Q96PM5 261 aa11.25□□□□□ -0.61
CLN3-213ENST00000565047 SRSF8Q9BRL6 282 aaKnown RBP11.25□□□□□ -0.61
CLN3-213ENST00000565047 COMMD9Q9P000 198 aa11.25□□□□□ -0.61
CLN3-213ENST00000565047 COMMD3Q9UBI1 195 aa11.25□□□□□ -0.61
CLN3-213ENST00000565047 ZNF785A8K8V0 405 aa11.24□□□□□ -0.61
CLN3-213ENST00000565047 HPGDSO60760 199 aa11.24□□□□□ -0.61
CLN3-213ENST00000565047 GGCTO75223 188 aaKnown RBP11.24□□□□□ -0.61
CLN3-213ENST00000565047 GABARAPO95166 117 aa11.24□□□□□ -0.61
CLN3-213ENST00000565047 OR2C1O95371 312 aa11.24□□□□□ -0.61
CLN3-213ENST00000565047 HLA-DMAP28067 261 aa11.24□□□□□ -0.61
CLN3-213ENST00000565047 TAS2R46P59540 309 aa11.24□□□□□ -0.61
CLN3-213ENST00000565047 HERV-K104P61576 105 aa11.24□□□□□ -0.61
CLN3-213ENST00000565047 AADACL3Q5VUY0 350 aa11.24□□□□□ -0.61
CLN3-213ENST00000565047 LINC00322Q6ZN03 302 aaPredicted RBP11.24□□□□□ -0.61
CLN3-213ENST00000565047 Q8N402 240 aa11.24□□□□□ -0.61
CLN3-213ENST00000565047 OR2K2Q8NGT1 345 aa11.24□□□□□ -0.61
CLN3-213ENST00000565047 OR5H2Q8NGV7 314 aa11.24□□□□□ -0.61
CLN3-213ENST00000565047 FCAMRQ8WWV6 532 aa11.24□□□□□ -0.61
CLN3-213ENST00000565047 BORCS5Q969J3 196 aa11.24□□□□□ -0.61
CLN3-213ENST00000565047 DGCR14Q96DF8 476 aaKnown RBP11.24□□□□□ -0.61
CLN3-213ENST00000565047 SCPEP1Q9HB40 452 aa11.24□□□□□ -0.61
CLN3-213ENST00000565047 HRASLSQ9HDD0 168 aa11.24□□□□□ -0.61
CLN3-213ENST00000565047 PEMTQ9UBM1 199 aa11.24□□□□□ -0.61
CLN3-213ENST00000565047 TEX50A0A1B0GTY4 177 aa11.23□□□□□ -0.61
CLN3-213ENST00000565047 MFSD2BA6NFX1 497 aa11.23□□□□□ -0.61
CLN3-213ENST00000565047 C2orf70A6NJV1 201 aa11.23□□□□□ -0.61
CLN3-213ENST00000565047 GPR31O00270 319 aa11.23□□□□□ -0.61
CLN3-213ENST00000565047 IGHV3-23P01764 117 aa11.23□□□□□ -0.61
CLN3-213ENST00000565047 RLN1P04808 185 aa11.23□□□□□ -0.61
CLN3-213ENST00000565047 HIST1H1BP16401 226 aaKnown RBP11.23□□□□□ -0.61
CLN3-213ENST00000565047 WT1-ASQ06250 92 aa11.23□□□□□ -0.61
CLN3-213ENST00000565047 DEFB114Q30KQ6 69 aa11.23□□□□□ -0.61
CLN3-213ENST00000565047 CD300EQ496F6 205 aaPredicted RBP11.23□□□□□ -0.61
CLN3-213ENST00000565047 OR10W1Q8NGF6 305 aa11.23□□□□□ -0.61
CLN3-213ENST00000565047 OR6F1Q8NGZ6 308 aa11.23□□□□□ -0.61
CLN3-213ENST00000565047 ZC4H2Q9NQZ6 224 aa11.23□□□□□ -0.61
CLN3-213ENST00000565047 NDUFA4L2Q9NRX3 87 aa11.23□□□□□ -0.61
CLN3-213ENST00000565047 S4R3C0 116 aa11.23□□□□□ -0.61
CLN3-213ENST00000565047 DPPA5A6NC42 116 aa11.22□□□□□ -0.61
CLN3-213ENST00000565047 MARCH11A6NNE9 402 aa11.22□□□□□ -0.61
CLN3-213ENST00000565047 DHFRP00374 187 aa11.22□□□□□ -0.61
CLN3-213ENST00000565047 RPA2P15927 270 aa11.22□□□□□ -0.61
CLN3-213ENST00000565047 LPAR6P43657 344 aa11.22□□□□□ -0.61
CLN3-213ENST00000565047 RORCP51449 518 aa11.22□□□□□ -0.61
CLN3-213ENST00000565047 MFAP2P55001 183 aa11.22□□□□□ -0.61
CLN3-213ENST00000565047 UCP3P55916 312 aa11.22□□□□□ -0.61
CLN3-213ENST00000565047 LCN12Q6JVE5 192 aa11.22□□□□□ -0.61
CLN3-213ENST00000565047 CLEC19AQ6UXS0 136 aa11.22□□□□□ -0.61
CLN3-213ENST00000565047 ZNF502Q8TBZ5 544 aa11.22□□□□□ -0.61
CLN3-213ENST00000565047 EEF1AKMT3Q96AZ1 226 aa11.22□□□□□ -0.61
CLN3-213ENST00000565047 QTRT1Q9BXR0 403 aaKnown RBP11.22□□□□□ -0.61
CLN3-213ENST00000565047 DNAH1Q9P2D7 4330 aa11.22□□□□□ -0.61
CLN3-213ENST00000565047 TRBV7-1A0A0A6YYK4 115 aa11.21□□□□□ -0.61
CLN3-213ENST00000565047 TMEM213A2RRL7 107 aa11.21□□□□□ -0.61
CLN3-213ENST00000565047 DBX1A6NMT0 343 aa11.21□□□□□ -0.61
CLN3-213ENST00000565047 A8MWP6 167 aa11.21□□□□□ -0.61
CLN3-213ENST00000565047 IGKV1-39P01597 117 aa11.21□□□□□ -0.61
CLN3-213ENST00000565047 IGKV1D-39P04432 117 aa11.21□□□□□ -0.61
CLN3-213ENST00000565047 CLEC3BP05452 202 aa11.21□□□□□ -0.61
CLN3-213ENST00000565047 FOLR2P14207 255 aa11.21□□□□□ -0.61
CLN3-213ENST00000565047 PTBP1P26599 531 aaKnown RBP eCLIP11.21□□□□□ -0.61
CLN3-213ENST00000565047 ARL3P36405 182 aa11.21□□□□□ -0.61
CLN3-213ENST00000565047 ALDH3B2P48448 385 aa11.21□□□□□ -0.61
CLN3-213ENST00000565047 SNX29P2Q8IUI4 249 aa11.21□□□□□ -0.61
CLN3-213ENST00000565047 SGPP2Q8IWX5 399 aa11.21□□□□□ -0.61
CLN3-213ENST00000565047 DMBX1Q8NFW5 382 aa11.21□□□□□ -0.61
CLN3-213ENST00000565047 COMMD5Q9GZQ3 224 aa11.21□□□□□ -0.61
CLN3-213ENST00000565047 FAM212BQ9NTI7 297 aaPredicted RBP11.21□□□□□ -0.61
CLN3-213ENST00000565047 SMIM31A0A1B0GVY4 71 aa11.2□□□□□ -0.62
CLN3-213ENST00000565047 C3orf84H3BNL1 204 aa11.2□□□□□ -0.62
CLN3-213ENST00000565047 KRASP01116 189 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms