RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 TRAV3A0A0B4J244 114 aa12.58□□□□□ -0.4
CLN3-211ENST00000564091 GALP22466 123 aa12.58□□□□□ -0.4
CLN3-211ENST00000564091 FCGR2CP31995 323 aa12.58□□□□□ -0.4
CLN3-211ENST00000564091 GPR183P32249 361 aa12.58□□□□□ -0.4
CLN3-211ENST00000564091 OR2B8PP59922 312 aa12.58□□□□□ -0.4
CLN3-211ENST00000564091 TIMM50Q3ZCQ8 353 aa12.58□□□□□ -0.4
CLN3-211ENST00000564091 SPAG16Q8N0X2 631 aa12.58□□□□□ -0.4
CLN3-211ENST00000564091 SECTM1Q8WVN6 248 aa12.58□□□□□ -0.4
CLN3-211ENST00000564091 LINC00476Q8WZB0 136 aa12.58□□□□□ -0.4
CLN3-211ENST00000564091 HRASLSQ9HDD0 168 aa12.58□□□□□ -0.4
CLN3-211ENST00000564091 TXNL4BQ9NX01 149 aaKnown RBP12.58□□□□□ -0.4
CLN3-211ENST00000564091 BET1LQ9NYM9 111 aa12.58□□□□□ -0.4
CLN3-211ENST00000564091 BLOC1S6Q9UL45 172 aa12.58□□□□□ -0.4
CLN3-211ENST00000564091 TRBV7-1A0A0A6YYK4 115 aa12.57□□□□□ -0.4
CLN3-211ENST00000564091 CXorf65A6NEN9 183 aa12.57□□□□□ -0.4
CLN3-211ENST00000564091 LY6G6CO95867 125 aa12.57□□□□□ -0.4
CLN3-211ENST00000564091 FCER2P06734 321 aa12.57□□□□□ -0.4
CLN3-211ENST00000564091 C8orf88P0DMB2 117 aa12.57□□□□□ -0.4
CLN3-211ENST00000564091 EWSR1Q01844 656 aaKnown RBP eCLIP12.57□□□□□ -0.4
CLN3-211ENST00000564091 ANKRD55Q3KP44 614 aa12.57□□□□□ -0.4
CLN3-211ENST00000564091 IZUMO2Q6UXV1 221 aa12.57□□□□□ -0.4
CLN3-211ENST00000564091 RBPMS2Q6ZRY4 209 aaKnown RBP12.57□□□□□ -0.4
CLN3-211ENST00000564091 GVQW1Q8N7I0 195 aa12.57□□□□□ -0.4
CLN3-211ENST00000564091 OR1L6Q8NGR2 347 aa12.57□□□□□ -0.4
CLN3-211ENST00000564091 OR13F1Q8NGS4 319 aa12.57□□□□□ -0.4
CLN3-211ENST00000564091 ZNF502Q8TBZ5 544 aa12.57□□□□□ -0.4
CLN3-211ENST00000564091 LGALS14Q8TCE9 139 aa12.57□□□□□ -0.4
CLN3-211ENST00000564091 CXorf58Q96LI9 332 aa12.57□□□□□ -0.4
CLN3-211ENST00000564091 RRP15Q9Y3B9 282 aaKnown RBP12.57□□□□□ -0.4
CLN3-211ENST00000564091 DNAH10Q8IVF4 4471 aa12.56□□□□□ -0.4
CLN3-211ENST00000564091 A0A0J9YWU9 116 aa12.56□□□□□ -0.4
CLN3-211ENST00000564091 IGLC7A0M8Q6 106 aa12.56□□□□□ -0.4
CLN3-211ENST00000564091 SULT1C2O00338 296 aa12.56□□□□□ -0.4
CLN3-211ENST00000564091 ARPC4P59998 168 aa12.56□□□□□ -0.4
CLN3-211ENST00000564091 ZNF773Q6PK81 442 aa12.56□□□□□ -0.4
CLN3-211ENST00000564091 OR4A5Q8NH83 315 aa12.56□□□□□ -0.4
CLN3-211ENST00000564091 RHBDL2Q9NX52 303 aa12.56□□□□□ -0.4
CLN3-211ENST00000564091 TRAV18A0A075B6X5 111 aa12.55□□□□□ -0.4
CLN3-211ENST00000564091 TRAV25A0A0B4J276 109 aa12.55□□□□□ -0.4
CLN3-211ENST00000564091 SCGNO76038 276 aa12.55□□□□□ -0.4
CLN3-211ENST00000564091 RPA2P15927 270 aa12.55□□□□□ -0.4
CLN3-211ENST00000564091 PSMB9P28065 219 aa12.55□□□□□ -0.4
CLN3-211ENST00000564091 FGF9P31371 208 aaPredicted RBP12.55□□□□□ -0.4
CLN3-211ENST00000564091 SFXN4Q6P4A7 337 aa12.55□□□□□ -0.4
CLN3-211ENST00000564091 PLET1Q6UQ28 207 aa12.55□□□□□ -0.4
CLN3-211ENST00000564091 BEST4Q8NFU0 473 aa12.55□□□□□ -0.4
CLN3-211ENST00000564091 MARC2Q969Z3 335 aa12.55□□□□□ -0.4
CLN3-211ENST00000564091 MRPL27Q9P0M9 148 aaKnown RBP12.55□□□□□ -0.4
CLN3-211ENST00000564091 UBQLN2Q9UHD9 624 aa12.55□□□□□ -0.4
CLN3-211ENST00000564091 UPK2O00526 184 aa12.54□□□□□ -0.4
CLN3-211ENST00000564091 PPYP01298 95 aa12.54□□□□□ -0.4
CLN3-211ENST00000564091 PTBP1P26599 531 aaKnown RBP eCLIP12.54□□□□□ -0.4
CLN3-211ENST00000564091 MSMO1Q15800 293 aa12.54□□□□□ -0.4
CLN3-211ENST00000564091 UBE2UQ5VVX9 321 aa12.54□□□□□ -0.4
CLN3-211ENST00000564091 TPRA1Q86W33 373 aa12.54□□□□□ -0.4
CLN3-211ENST00000564091 HOGA1Q86XE5 327 aa12.54□□□□□ -0.4
CLN3-211ENST00000564091 OR2C3Q8N628 320 aa12.54□□□□□ -0.4
CLN3-211ENST00000564091 OR10W1Q8NGF6 305 aa12.54□□□□□ -0.4
CLN3-211ENST00000564091 OR5H6Q8NGV6 325 aa12.54□□□□□ -0.4
CLN3-211ENST00000564091 AIFM2Q9BRQ8 373 aa12.54□□□□□ -0.4
CLN3-211ENST00000564091 COMMD5Q9GZQ3 224 aa12.54□□□□□ -0.4
CLN3-211ENST00000564091 SLC5A7Q9GZV3 580 aa12.54□□□□□ -0.4
CLN3-211ENST00000564091 VCX3BQ9H321 246 aa12.54□□□□□ -0.4
CLN3-211ENST00000564091 UFC1Q9Y3C8 167 aa12.54□□□□□ -0.4
CLN3-211ENST00000564091 HERC2O95714 4834 aa12.54□□□□□ -0.4
CLN3-211ENST00000564091 RBFOX2O43251 390 aaKnown RBP eCLIP12.53□□□□□ -0.4
CLN3-211ENST00000564091 TGOLN2O43493 480 aa12.53□□□□□ -0.4
CLN3-211ENST00000564091 HPRT1P00492 218 aa12.53□□□□□ -0.4
CLN3-211ENST00000564091 CLEC2LP0C7M8 214 aa12.53□□□□□ -0.4
CLN3-211ENST00000564091 NQO2P16083 231 aa12.53□□□□□ -0.4
CLN3-211ENST00000564091 HSPA13P48723 471 aa12.53□□□□□ -0.4
CLN3-211ENST00000564091 TAS2R31P59538 309 aa12.53□□□□□ -0.4
CLN3-211ENST00000564091 FXYD4P59646 89 aa12.53□□□□□ -0.4
CLN3-211ENST00000564091 MXD1Q05195 221 aa12.53□□□□□ -0.4
CLN3-211ENST00000564091 LYG2Q86SG7 212 aa12.53□□□□□ -0.4
CLN3-211ENST00000564091 SPARTQ8N0X7 666 aa12.53□□□□□ -0.4
CLN3-211ENST00000564091 ZBTB34Q8NCN2 500 aa12.53□□□□□ -0.4
CLN3-211ENST00000564091 ZNF436Q9C0F3 470 aaPredicted RBP12.53□□□□□ -0.4
CLN3-211ENST00000564091 C5orf66Q9H5L9 145 aa12.53□□□□□ -0.4
CLN3-211ENST00000564091 TMEM140Q9NV12 185 aa12.53□□□□□ -0.4
CLN3-211ENST00000564091 IGHV3-21A0A0B4J1V1 117 aa12.52□□□□□ -0.41
CLN3-211ENST00000564091 SPRY2O43597 315 aa12.52□□□□□ -0.41
CLN3-211ENST00000564091 S1PR2O95136 353 aa12.52□□□□□ -0.41
CLN3-211ENST00000564091 SDC2P34741 201 aa12.52□□□□□ -0.41
CLN3-211ENST00000564091 ELLP55199 621 aaPredicted RBP12.52□□□□□ -0.41
CLN3-211ENST00000564091 POU2AF1Q16633 256 aa12.52□□□□□ -0.41
CLN3-211ENST00000564091 DEFB135Q30KP9 77 aa12.52□□□□□ -0.41
CLN3-211ENST00000564091 ZNF818PQ6ZRF7 136 aa12.52□□□□□ -0.41
CLN3-211ENST00000564091 SLC38A6Q8IZM9 456 aa12.52□□□□□ -0.41
CLN3-211ENST00000564091 OR51H1Q8NH63 302 aa12.52□□□□□ -0.41
CLN3-211ENST00000564091 TMEM190Q8WZ59 177 aa12.52□□□□□ -0.41
CLN3-211ENST00000564091 SLC25A38Q96DW6 304 aa12.52□□□□□ -0.41
CLN3-211ENST00000564091 SPAG8Q99932 426 aaPredicted RBP12.52□□□□□ -0.41
CLN3-211ENST00000564091 RNF167Q9H6Y7 350 aa12.52□□□□□ -0.41
CLN3-211ENST00000564091 THYN1Q9P016 225 aa12.52□□□□□ -0.41
CLN3-211ENST00000564091 SSR3Q9UNL2 185 aa12.52□□□□□ -0.41
CLN3-211ENST00000564091 OR2T8A6NH00 312 aa12.51□□□□□ -0.41
CLN3-211ENST00000564091 OR13C7P0DN81 318 aa12.51□□□□□ -0.41
CLN3-211ENST00000564091 BMI1P35226 326 aa12.51□□□□□ -0.41
CLN3-211ENST00000564091 APOC4P55056 127 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms