RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 FBP1P09467 338 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 CCL3L1P16619 93 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 FGF7P21781 194 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 GRNP28799 593 aaKnown RBP6.13□□□□□ -1.43
VPS39-204ENST00000561818 LGALS4P56470 323 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 BRWD1-AS2P59051 145 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 TAS2R45P59539 299 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 RPS16P62249 146 aaKnown RBP6.13□□□□□ -1.43
VPS39-204ENST00000561818 SELENOTP62341 195 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 PAX2Q02962 417 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 RHEBQ15382 184 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 GUK1Q16774 197 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 OR8G2PQ6IF36 304 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 TEPPQ6URK8 271 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 PNKDQ8N490 385 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 ZNF114Q8NC26 417 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 NEUROG1Q92886 237 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 GPHA2Q96T91 129 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 NPCDR1Q9BY65 106 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 MRPL20Q9BYC9 149 aaKnown RBP6.13□□□□□ -1.43
VPS39-204ENST00000561818 UBTD1Q9HAC8 227 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 WFDC1Q9HC57 220 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 SLC39A9Q9NUM3 307 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 C1RLQ9NZP8 487 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 HCFC1P51610 2035 aa6.13□□□□□ -1.43
VPS39-204ENST00000561818 DCHS1Q96JQ0 3298 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 ASPMQ8IZT6 3477 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 A0A1W2PPV4 95 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 C15orf62A8K5M9 175 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 TMEM250H0YL14 139 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 OVOL3O00110 214 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 KCNAB3O43448 404 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 APOC3P02656 99 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 SOD3P08294 240 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 SNRNP70P08621 437 aaKnown RBP6.12□□□□□ -1.43
VPS39-204ENST00000561818 OR9G9P0C7N8 305 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 SAA1P0DJI8 122 aaPredicted RBP6.12□□□□□ -1.43
VPS39-204ENST00000561818 PAX1P15863 534 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 COL8A2P25067 703 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 PAX6P26367 422 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 BRS3P32247 399 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 RPL29P47914 159 aaKnown RBP6.12□□□□□ -1.43
VPS39-204ENST00000561818 ATMQ13315 3056 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 HABP2Q14520 560 aaPredicted RBP6.12□□□□□ -1.43
VPS39-204ENST00000561818 HNF4GQ14541 408 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 BSXQ3C1V8 233 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 ZNF787Q6DD87 383 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 CLEC2AQ6UVW9 174 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 LYPD2Q6UXB3 125 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 SSX9Q7RTT3 188 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 TMEM144Q7Z5S9 345 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 ZCCHC24Q8N2G6 241 aaKnown RBP6.12□□□□□ -1.43
VPS39-204ENST00000561818 BPIFCQ8NFQ6 507 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 SFT2D1Q8WV19 159 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 OR4C12Q96R67 309 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 CCL19Q99731 98 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 SSX3Q99909 188 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 TCEAL7Q9BRU2 100 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 DCAF16Q9NXF7 216 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 ONECUT1Q9UBC0 465 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 VAX2Q9UIW0 290 aa6.12□□□□□ -1.43
VPS39-204ENST00000561818 PKD1L2Q7Z442 2459 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 ARID1AO14497 2285 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 DIDO1Q9BTC0 2240 aaKnown RBP6.11□□□□□ -1.43
VPS39-204ENST00000561818 CHD8Q9HCK8 2581 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 IGHV1-3A0A0C4DH29 117 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 RBFOX3A6NFN3 312 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 PMS2P5A8MQ11 134 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 SEC14L6B5MCN3 397 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 LCE2BO14633 110 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 PDE6DO43924 150 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 IGHV2-5P01817 119 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 TFF1P04155 84 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 SFTA3P0C7M3 94 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 MDKP21741 143 aaPredicted RBP6.11□□□□□ -1.43
VPS39-204ENST00000561818 BPIFB3P59826 476 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 RHOBP62745 196 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 DEFA5Q01523 94 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 AKR1C1Q04828 323 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 SOHLH1Q5JUK2 328 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 ZNF506Q5JVG8 444 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 TPTE2P1Q5T6R2 138 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 DUX4L9Q6RFH8 374 aaPredicted RBP6.11□□□□□ -1.43
VPS39-204ENST00000561818 C5orf24Q7Z6I8 188 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 ZNF295-AS1Q8N0V1 137 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 TEX29Q8N6K0 151 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 STXBP6Q8NFX7 210 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 OR4P4Q8NGL7 312 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 BTF3L4Q96K17 158 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 TMEM68Q96MH6 324 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 PFDN5Q99471 154 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 NIPSNAP3BQ9BS92 247 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 NKX6-2Q9C056 277 aaPredicted RBP6.11□□□□□ -1.43
VPS39-204ENST00000561818 SH3BGRL3Q9H299 93 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 NDUFA4L2Q9NRX3 87 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 THYN1Q9P016 225 aa6.11□□□□□ -1.43
VPS39-204ENST00000561818 TPRP12270 2363 aaKnown RBP6.1□□□□□ -1.43
VPS39-204ENST00000561818 BSNQ9UPA5 3926 aa6.1□□□□□ -1.43
VPS39-204ENST00000561818 RAI1Q7Z5J4 1906 aaPredicted RBP6.1□□□□□ -1.43
VPS39-204ENST00000561818 ELOA3CA0A087WX78 387 aaPredicted RBP6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms