RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 TUBA4BQ9H853 241 aa11.22□□□□□ -0.61
CSPG4P11-201ENST00000560634 FOXJ2Q9P0K8 574 aa11.22□□□□□ -0.61
CSPG4P11-201ENST00000560634 FOXD3Q9UJU5 478 aaPredicted RBP11.22□□□□□ -0.61
CSPG4P11-201ENST00000560634 IGKV3D-11A0A0A0MRZ8 115 aa11.21□□□□□ -0.61
CSPG4P11-201ENST00000560634 SRXN1Q9BYN0 137 aa11.21□□□□□ -0.61
CSPG4P11-201ENST00000560634 CKAP5Q14008 2032 aa11.21□□□□□ -0.61
CSPG4P11-201ENST00000560634 CDK5RAP2Q96SN8 1893 aa11.21□□□□□ -0.61
CSPG4P11-201ENST00000560634 H3BTX0 84 aa11.21□□□□□ -0.61
CSPG4P11-201ENST00000560634 NPFFO15130 113 aa11.21□□□□□ -0.61
CSPG4P11-201ENST00000560634 GREM1O60565 184 aa11.21□□□□□ -0.61
CSPG4P11-201ENST00000560634 REG1AP05451 166 aa11.21□□□□□ -0.61
CSPG4P11-201ENST00000560634 CRYBA2P53672 197 aa11.21□□□□□ -0.61
CSPG4P11-201ENST00000560634 EGR4Q05215 589 aa11.21□□□□□ -0.61
CSPG4P11-201ENST00000560634 CYB5R2Q6BCY4 276 aa11.21□□□□□ -0.61
CSPG4P11-201ENST00000560634 OR13C6PQ8NH95 151 aa11.21□□□□□ -0.61
CSPG4P11-201ENST00000560634 DUX5Q96PT3 197 aa11.21□□□□□ -0.61
CSPG4P11-201ENST00000560634 AICDAQ9GZX7 198 aa11.21□□□□□ -0.61
CSPG4P11-201ENST00000560634 MRPL16Q9NX20 251 aaKnown RBP11.21□□□□□ -0.61
CSPG4P11-201ENST00000560634 EGR1P18146 543 aa11.21□□□□□ -0.61
CSPG4P11-201ENST00000560634 NUTF2P61970 127 aaKnown RBP11.21□□□□□ -0.61
CSPG4P11-201ENST00000560634 PNKDQ8N490 385 aa11.21□□□□□ -0.61
CSPG4P11-201ENST00000560634 LEAP2Q969E1 77 aa11.21□□□□□ -0.61
CSPG4P11-201ENST00000560634 ELOVL5Q9NYP7 299 aa11.21□□□□□ -0.61
CSPG4P11-201ENST00000560634 TRAV24A0A0B4J272 114 aa11.21□□□□□ -0.62
CSPG4P11-201ENST00000560634 NIT1Q86X76 327 aa11.21□□□□□ -0.62
CSPG4P11-201ENST00000560634 VKORC1L1Q8N0U8 176 aa11.21□□□□□ -0.62
CSPG4P11-201ENST00000560634 CIARTQ8N365 385 aaPredicted RBP11.21□□□□□ -0.62
CSPG4P11-201ENST00000560634 C10orf126Q8N4M7 172 aa11.21□□□□□ -0.62
CSPG4P11-201ENST00000560634 FAM169BQ8N8A8 192 aa11.21□□□□□ -0.62
CSPG4P11-201ENST00000560634 SPSB2Q99619 263 aa11.21□□□□□ -0.62
CSPG4P11-201ENST00000560634 PRDM13Q9H4Q3 707 aa11.21□□□□□ -0.62
CSPG4P11-201ENST00000560634 BEX4Q9NWD9 120 aaPredicted RBP11.21□□□□□ -0.62
CSPG4P11-201ENST00000560634 PEX7O00628 323 aa11.2□□□□□ -0.62
CSPG4P11-201ENST00000560634 CSRP3P50461 194 aa11.2□□□□□ -0.62
CSPG4P11-201ENST00000560634 C4orf51C9J302 202 aa11.2□□□□□ -0.62
CSPG4P11-201ENST00000560634 ASIPP42127 132 aa11.2□□□□□ -0.62
CSPG4P11-201ENST00000560634 TIMM23BQ5SRD1 257 aa11.2□□□□□ -0.62
CSPG4P11-201ENST00000560634 TBL2Q9Y4P3 447 aaKnown RBP11.2□□□□□ -0.62
CSPG4P11-201ENST00000560634 AKAP6Q13023 2319 aa11.2□□□□□ -0.62
CSPG4P11-201ENST00000560634 C12orf77C9JDV5 145 aa11.2□□□□□ -0.62
CSPG4P11-201ENST00000560634 TSPAN13O95857 204 aa11.2□□□□□ -0.62
CSPG4P11-201ENST00000560634 DPM3Q9P2X0 92 aa11.2□□□□□ -0.62
CSPG4P11-201ENST00000560634 TNFRSF18Q9Y5U5 241 aa11.2□□□□□ -0.62
CSPG4P11-201ENST00000560634 MOSP00540 346 aa11.2□□□□□ -0.62
CSPG4P11-201ENST00000560634 TMPRSS3P57727 454 aa11.2□□□□□ -0.62
CSPG4P11-201ENST00000560634 TMEM101Q96IK0 257 aa11.2□□□□□ -0.62
CSPG4P11-201ENST00000560634 A0A1B0GWB2 263 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 MSGN1A6NI15 193 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 PDLIM4P50479 330 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 CDCP2Q5VXM1 449 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 SDHCQ99643 169 aaPredicted RBP11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 GSN-AS1Q9NRJ2 163 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 APOHP02749 345 aaPredicted RBP11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 RNASEH2CQ8TDP1 164 aaKnown RBP11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 TIMP4Q99727 224 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 RTTNQ86VV8 2226 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 CACNA1IQ9P0X4 2223 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 GVINP1Q7Z2Y8 2422 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 A0A0G2JLM5 398 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 H3BRM9 83 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 HOXA5P20719 270 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 TEX45Q8NA69 505 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 FMC1Q96HJ9 113 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 CGAP01215 116 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 GHRHP01286 108 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 ZP1P60852 638 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 SAMD13Q5VXD3 122 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 C19orf48Q6RUI8 117 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 ACP7Q6ZNF0 438 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 SCGB3A1Q96QR1 104 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 SDF2L1Q9HCN8 221 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 DOPEY2Q9Y3R5 2298 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 SPTBP11277 2137 aa11.19□□□□□ -0.62
CSPG4P11-201ENST00000560634 PEAR1Q5VY43 1037 aaPredicted RBP11.18□□□□□ -0.62
CSPG4P11-201ENST00000560634 WDR82Q6UXN9 313 aa11.18□□□□□ -0.62
CSPG4P11-201ENST00000560634 RPP21Q9H633 154 aaKnown RBP11.18□□□□□ -0.62
CSPG4P11-201ENST00000560634 ACSF3Q4G176 576 aaPredicted RBP11.18□□□□□ -0.62
CSPG4P11-201ENST00000560634 OR52E5Q8NH55 327 aa11.18□□□□□ -0.62
CSPG4P11-201ENST00000560634 PILRBQ9UKJ0 227 aa11.18□□□□□ -0.62
CSPG4P11-201ENST00000560634 STARD6P59095 220 aa11.18□□□□□ -0.62
CSPG4P11-201ENST00000560634 FAM90A1Q86YD7 464 aa11.18□□□□□ -0.62
CSPG4P11-201ENST00000560634 C2orf88Q9BSF0 95 aa11.18□□□□□ -0.62
CSPG4P11-201ENST00000560634 ZNHIT1O43257 154 aa11.18□□□□□ -0.62
CSPG4P11-201ENST00000560634 ORMDL3Q8N138 153 aa11.18□□□□□ -0.62
CSPG4P11-201ENST00000560634 ZNRF1Q8ND25 227 aa11.18□□□□□ -0.62
CSPG4P11-201ENST00000560634 C1orf162Q8NEQ5 155 aaPredicted RBP11.18□□□□□ -0.62
CSPG4P11-201ENST00000560634 ESPL1Q14674 2120 aa11.17□□□□□ -0.62
CSPG4P11-201ENST00000560634 A0A0G2JK05 382 aa11.17□□□□□ -0.62
CSPG4P11-201ENST00000560634 APOBEC3AP31941 199 aaPredicted RBP11.17□□□□□ -0.62
CSPG4P11-201ENST00000560634 ATP5J2P56134 94 aa11.17□□□□□ -0.62
CSPG4P11-201ENST00000560634 CENPVQ7Z7K6 275 aaPredicted RBP11.17□□□□□ -0.62
CSPG4P11-201ENST00000560634 C21orf62Q9NYP8 219 aa11.17□□□□□ -0.62
CSPG4P11-201ENST00000560634 ALPK2Q86TB3 2170 aa11.17□□□□□ -0.62
CSPG4P11-201ENST00000560634 SHISA3A0PJX4 238 aa11.17□□□□□ -0.62
CSPG4P11-201ENST00000560634 RPL39P5Q59GN2 51 aa11.17□□□□□ -0.62
CSPG4P11-201ENST00000560634 C14orf144Q96I85 54 aa11.17□□□□□ -0.62
CSPG4P11-201ENST00000560634 C18orf15Q96N68 181 aa11.17□□□□□ -0.62
CSPG4P11-201ENST00000560634 IZUMO1RA6ND01 250 aa11.17□□□□□ -0.62
CSPG4P11-201ENST00000560634 IGHV3-48P01763 117 aa11.17□□□□□ -0.62
CSPG4P11-201ENST00000560634 TRGV3P03979 118 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms