RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 DEFA4P12838 97 aa13.12□□□□□ -0.31
CLSTN3-214ENST00000542663 CRHBPP24387 322 aa13.12□□□□□ -0.31
CLSTN3-214ENST00000542663 PSMD7P51665 324 aa13.12□□□□□ -0.31
CLSTN3-214ENST00000542663 RPL8P62917 257 aaKnown RBP13.12□□□□□ -0.31
CLSTN3-214ENST00000542663 TRAM1Q15629 374 aa13.12□□□□□ -0.31
CLSTN3-214ENST00000542663 SSX9Q7RTT3 188 aa13.12□□□□□ -0.31
CLSTN3-214ENST00000542663 TCTEX1D2Q8WW35 142 aa13.12□□□□□ -0.31
CLSTN3-214ENST00000542663 TMEM190Q8WZ59 177 aa13.12□□□□□ -0.31
CLSTN3-214ENST00000542663 GPHA2Q96T91 129 aa13.12□□□□□ -0.31
CLSTN3-214ENST00000542663 SPATA2Q9UM82 520 aa13.12□□□□□ -0.31
CLSTN3-214ENST00000542663 PKHD1P08F94 4074 aa13.12□□□□□ -0.31
CLSTN3-214ENST00000542663 HSMCR30P0CW71 290 aa13.11□□□□□ -0.31
CLSTN3-214ENST00000542663 TALDO1P37837 337 aa13.11□□□□□ -0.31
CLSTN3-214ENST00000542663 OR10A3P58181 314 aa13.11□□□□□ -0.31
CLSTN3-214ENST00000542663 NANOS2P60321 138 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-214ENST00000542663 PLET1Q6UQ28 207 aa13.11□□□□□ -0.31
CLSTN3-214ENST00000542663 GALNT14Q96FL9 552 aa13.11□□□□□ -0.31
CLSTN3-214ENST00000542663 HSD17B10Q99714 261 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-214ENST00000542663 DNAH2Q9P225 4427 aa13.1□□□□□ -0.31
CLSTN3-214ENST00000542663 IGLC7A0M8Q6 106 aa13.1□□□□□ -0.31
CLSTN3-214ENST00000542663 TGOLN2O43493 480 aa13.1□□□□□ -0.31
CLSTN3-214ENST00000542663 SLC22A5O76082 557 aa13.1□□□□□ -0.31
CLSTN3-214ENST00000542663 HLA-GP17693 338 aa13.1□□□□□ -0.31
CLSTN3-214ENST00000542663 RAB6AP20340 208 aa13.1□□□□□ -0.31
CLSTN3-214ENST00000542663 DTYMKP23919 212 aa13.1□□□□□ -0.31
CLSTN3-214ENST00000542663 PSMA1P25786 263 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-214ENST00000542663 OR2B8PP59922 312 aa13.1□□□□□ -0.31
CLSTN3-214ENST00000542663 SSX1Q16384 188 aa13.1□□□□□ -0.31
CLSTN3-214ENST00000542663 MFSD4AQ8N468 514 aa13.1□□□□□ -0.31
CLSTN3-214ENST00000542663 TAS2R8Q9NYW2 309 aa13.1□□□□□ -0.31
CLSTN3-214ENST00000542663 RPA2P15927 270 aa13.09□□□□□ -0.31
CLSTN3-214ENST00000542663 PTBP1P26599 531 aaKnown RBP eCLIP13.09□□□□□ -0.31
CLSTN3-214ENST00000542663 RANBP1P43487 201 aa13.09□□□□□ -0.31
CLSTN3-214ENST00000542663 MLLT11Q13015 90 aaPredicted RBP13.09□□□□□ -0.31
CLSTN3-214ENST00000542663 ZNF124Q15973 351 aa13.09□□□□□ -0.31
CLSTN3-214ENST00000542663 TIMM50Q3ZCQ8 353 aa13.09□□□□□ -0.31
CLSTN3-214ENST00000542663 OGFRL1Q5TC84 451 aaPredicted RBP13.09□□□□□ -0.31
CLSTN3-214ENST00000542663 OR5B3Q8NH48 314 aa13.09□□□□□ -0.31
CLSTN3-214ENST00000542663 DAZ1Q9NQZ3 744 aaKnown RBP13.09□□□□□ -0.31
CLSTN3-214ENST00000542663 BET1LQ9NYM9 111 aa13.09□□□□□ -0.31
CLSTN3-214ENST00000542663 MUC4Q99102 2169 aa13.08□□□□□ -0.31
CLSTN3-214ENST00000542663 IFITM5A6NNB3 132 aa13.08□□□□□ -0.32
CLSTN3-214ENST00000542663 HRASP01112 189 aa13.08□□□□□ -0.32
CLSTN3-214ENST00000542663 CTXN2P0C2S0 81 aa13.08□□□□□ -0.32
CLSTN3-214ENST00000542663 APRG1Q8IVJ8 170 aa13.08□□□□□ -0.32
CLSTN3-214ENST00000542663 TRAV3A0A0B4J244 114 aa13.07□□□□□ -0.32
CLSTN3-214ENST00000542663 METTL21EPA6NDL7 271 aa13.07□□□□□ -0.32
CLSTN3-214ENST00000542663 OR2T8A6NH00 312 aa13.07□□□□□ -0.32
CLSTN3-214ENST00000542663 OR4C46A6NHA9 309 aa13.07□□□□□ -0.32
CLSTN3-214ENST00000542663 RBMS2Q15434 407 aaKnown RBP13.07□□□□□ -0.32
CLSTN3-214ENST00000542663 CDNFQ49AH0 187 aa13.07□□□□□ -0.32
CLSTN3-214ENST00000542663 LAMTOR1Q6IAA8 161 aa13.07□□□□□ -0.32
CLSTN3-214ENST00000542663 ZNF66Q6ZN08 573 aa13.07□□□□□ -0.32
CLSTN3-214ENST00000542663 OR4A5Q8NH83 315 aa13.07□□□□□ -0.32
CLSTN3-214ENST00000542663 C11orf45Q8TAV5 145 aa13.07□□□□□ -0.32
CLSTN3-214ENST00000542663 CD300LFQ8TDQ1 290 aa13.07□□□□□ -0.32
CLSTN3-214ENST00000542663 RARRES2Q99969 163 aa13.07□□□□□ -0.32
CLSTN3-214ENST00000542663 C11orf68Q9H3H3 251 aaKnown RBP13.07□□□□□ -0.32
CLSTN3-214ENST00000542663 SCN3BQ9NY72 215 aa13.07□□□□□ -0.32
CLSTN3-214ENST00000542663 FBXL17Q9UF56 701 aa13.07□□□□□ -0.32
CLSTN3-214ENST00000542663 DNAH17Q9UFH2 4485 aa13.07□□□□□ -0.32
CLSTN3-214ENST00000542663 IGHV3OR16-8A0A075B7F1 116 aa13.06□□□□□ -0.32
CLSTN3-214ENST00000542663 CTSDP07339 412 aaPredicted RBP13.06□□□□□ -0.32
CLSTN3-214ENST00000542663 RCN1Q15293 331 aa13.06□□□□□ -0.32
CLSTN3-214ENST00000542663 HACD4Q5VWC8 232 aa13.06□□□□□ -0.32
CLSTN3-214ENST00000542663 CNIH2Q6PI25 160 aa13.06□□□□□ -0.32
CLSTN3-214ENST00000542663 NR2C2APQ86WQ0 139 aa13.06□□□□□ -0.32
CLSTN3-214ENST00000542663 OR10W1Q8NGF6 305 aa13.06□□□□□ -0.32
CLSTN3-214ENST00000542663 VN1R17PQ8TDU5 208 aa13.06□□□□□ -0.32
CLSTN3-214ENST00000542663 NUDCD2Q8WVJ2 157 aa13.06□□□□□ -0.32
CLSTN3-214ENST00000542663 ZNF414Q96IQ9 312 aa13.06□□□□□ -0.32
CLSTN3-214ENST00000542663 CHRDL1Q9BU40 450 aa13.06□□□□□ -0.32
CLSTN3-214ENST00000542663 MFFQ9GZY8 342 aa13.06□□□□□ -0.32
CLSTN3-214ENST00000542663 CSTL1Q9H114 145 aa13.06□□□□□ -0.32
CLSTN3-214ENST00000542663 ATG5Q9H1Y0 275 aa13.06□□□□□ -0.32
CLSTN3-214ENST00000542663 DCSTAMPQ9H295 470 aa13.06□□□□□ -0.32
CLSTN3-214ENST00000542663 DUSP21Q9H596 190 aa13.06□□□□□ -0.32
CLSTN3-214ENST00000542663 HRASLSQ9HDD0 168 aa13.06□□□□□ -0.32
CLSTN3-214ENST00000542663 ACOT13Q9NPJ3 140 aa13.06□□□□□ -0.32
CLSTN3-214ENST00000542663 TRAV1-2A0A0B4J238 106 aa13.05□□□□□ -0.32
CLSTN3-214ENST00000542663 ERICH4A6NGS2 130 aa13.05□□□□□ -0.32
CLSTN3-214ENST00000542663 F8W735 103 aaPredicted RBP13.05□□□□□ -0.32
CLSTN3-214ENST00000542663 CASQ2O14958 399 aaPredicted RBP13.05□□□□□ -0.32
CLSTN3-214ENST00000542663 TNFSF12O43508 249 aa13.05□□□□□ -0.32
CLSTN3-214ENST00000542663 ZNF207O43670 478 aaKnown RBP13.05□□□□□ -0.32
CLSTN3-214ENST00000542663 C2CD4CQ8TF44 421 aa13.05□□□□□ -0.32
CLSTN3-214ENST00000542663 BSCL2Q96G97 398 aaPredicted RBP13.05□□□□□ -0.32
CLSTN3-214ENST00000542663 MGLLQ99685 303 aa13.05□□□□□ -0.32
CLSTN3-214ENST00000542663 THYN1Q9P016 225 aa13.05□□□□□ -0.32
CLSTN3-214ENST00000542663 APLNQ9ULZ1 77 aa13.05□□□□□ -0.32
CLSTN3-214ENST00000542663 DYNC1H1Q14204 4646 aaKnown RBP13.04□□□□□ -0.32
CLSTN3-214ENST00000542663 MPTX1A8MV57 137 aa13.04□□□□□ -0.32
CLSTN3-214ENST00000542663 NDUFA4O00483 81 aa13.04□□□□□ -0.32
CLSTN3-214ENST00000542663 UPK2O00526 184 aa13.04□□□□□ -0.32
CLSTN3-214ENST00000542663 PDCD5O14737 125 aa13.04□□□□□ -0.32
CLSTN3-214ENST00000542663 SSX5O60225 188 aa13.04□□□□□ -0.32
CLSTN3-214ENST00000542663 IFNA4P05014 189 aa13.04□□□□□ -0.32
CLSTN3-214ENST00000542663 ADMP35318 185 aa13.04□□□□□ -0.32
CLSTN3-214ENST00000542663 MFAP2P55001 183 aa13.04□□□□□ -0.32
CLSTN3-214ENST00000542663 ARL6IP1Q15041 203 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms