RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 FAM219AQ8IW50 185 aa9.16□□□□□ -0.94
YBX3-213ENST00000542641 FOXRED2Q8IWF2 684 aa9.16□□□□□ -0.94
YBX3-213ENST00000542641 UXS1Q8NBZ7 420 aa9.16□□□□□ -0.94
YBX3-213ENST00000542641 OR4A16Q8NH70 328 aa9.16□□□□□ -0.94
YBX3-213ENST00000542641 LINC01006Q8NI28 216 aa9.16□□□□□ -0.94
YBX3-213ENST00000542641 GRPEL2Q8TAA5 225 aa9.16□□□□□ -0.94
YBX3-213ENST00000542641 ABHD5Q8WTS1 349 aa9.16□□□□□ -0.94
YBX3-213ENST00000542641 ARPC1AQ92747 370 aa9.16□□□□□ -0.94
YBX3-213ENST00000542641 PARP11Q9NR21 331 aa9.16□□□□□ -0.94
YBX3-213ENST00000542641 FKBP11Q9NYL4 201 aa9.16□□□□□ -0.94
YBX3-213ENST00000542641 PRNDQ9UKY0 176 aa9.16□□□□□ -0.94
YBX3-213ENST00000542641 A0A0B4J293 547 aa9.15□□□□□ -0.94
YBX3-213ENST00000542641 A0A0G2JRQ6 117 aa9.15□□□□□ -0.94
YBX3-213ENST00000542641 DUXBA0A1W2PPF3 345 aa9.15□□□□□ -0.94
YBX3-213ENST00000542641 AP4M1O00189 453 aa9.15□□□□□ -0.94
YBX3-213ENST00000542641 OPN1MWP04001 364 aa9.15□□□□□ -0.94
YBX3-213ENST00000542641 P0C879 139 aa9.15□□□□□ -0.94
YBX3-213ENST00000542641 OPN1MW2P0DN77 364 aa9.15□□□□□ -0.94
YBX3-213ENST00000542641 OPN1MW3P0DN78 364 aa9.15□□□□□ -0.94
YBX3-213ENST00000542641 COMPP49747 757 aaPredicted RBP9.15□□□□□ -0.94
YBX3-213ENST00000542641 OR2B8PP59922 312 aa9.15□□□□□ -0.94
YBX3-213ENST00000542641 SSBP2P81877 361 aaPredicted RBP9.15□□□□□ -0.94
YBX3-213ENST00000542641 TREML4Q6UXN2 200 aa9.15□□□□□ -0.94
YBX3-213ENST00000542641 C12orf45Q8N5I9 185 aaPredicted RBP9.15□□□□□ -0.94
YBX3-213ENST00000542641 TMEM158Q8WZ71 300 aa9.15□□□□□ -0.94
YBX3-213ENST00000542641 GPR146Q96CH1 333 aa9.15□□□□□ -0.94
YBX3-213ENST00000542641 COMMD5Q9GZQ3 224 aa9.15□□□□□ -0.94
YBX3-213ENST00000542641 SERTAD4Q9NUC0 356 aa9.15□□□□□ -0.94
YBX3-213ENST00000542641 LINC00527Q9UJ94 153 aa9.15□□□□□ -0.94
YBX3-213ENST00000542641 TMED3Q9Y3Q3 217 aa9.15□□□□□ -0.94
YBX3-213ENST00000542641 TEX50A0A1B0GTY4 177 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 CLPSL1A2RUU4 121 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 MSGN1A6NI15 193 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 C15orf61A6NNL5 157 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 SNRPGP15A8MWD9 76 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 ATP6V0E1O15342 81 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 ADAP1O75689 374 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 IFNA21P01568 189 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 IGF1P05019 195 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 FGF2P09038 288 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 MYOD1P15172 320 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 MDKP21741 143 aaPredicted RBP9.14□□□□□ -0.95
YBX3-213ENST00000542641 RPL27AP46776 148 aaKnown RBP9.14□□□□□ -0.95
YBX3-213ENST00000542641 NDPQ00604 133 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 TMEM267Q0VDI3 215 aaPredicted RBP9.14□□□□□ -0.95
YBX3-213ENST00000542641 FOXL1Q12952 345 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 TATDN3Q17R31 274 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 NMSQ5H8A3 153 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 C10orf55Q5SWW7 151 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 Q6ZRM9 215 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 MINDY2Q8NBR6 621 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 SGMS2Q8NHU3 365 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 CHPT1Q8WUD6 406 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 SRSF12Q8WXF0 261 aaKnown RBP9.14□□□□□ -0.95
YBX3-213ENST00000542641 NOL4LQ96MY1 436 aaPredicted RBP9.14□□□□□ -0.95
YBX3-213ENST00000542641 FYTTD1Q96QD9 318 aaKnown RBP9.14□□□□□ -0.95
YBX3-213ENST00000542641 SPIN2AQ99865 258 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 SPIN2BQ9BPZ2 258 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 FAM103A1Q9BTL3 118 aaKnown RBP9.14□□□□□ -0.95
YBX3-213ENST00000542641 C19orf24Q9BVV8 132 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.14□□□□□ -0.95
YBX3-213ENST00000542641 TMEM14BQ9NUH8 114 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 CACNG5Q9UF02 275 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 FOXA2Q9Y261 457 aaPredicted RBP9.14□□□□□ -0.95
YBX3-213ENST00000542641 RNF114Q9Y508 228 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 OR51B2Q9Y5P1 312 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 WSB1Q9Y6I7 421 aa9.14□□□□□ -0.95
YBX3-213ENST00000542641 A0A1B0GU03 582 aa9.13□□□□□ -0.95
YBX3-213ENST00000542641 A0A1B0GUS0 222 aa9.13□□□□□ -0.95
YBX3-213ENST00000542641 TMEM89A2RUT3 159 aa9.13□□□□□ -0.95
YBX3-213ENST00000542641 DBX1A6NMT0 343 aa9.13□□□□□ -0.95
YBX3-213ENST00000542641 TRAPPC2P0DI81 140 aa9.13□□□□□ -0.95
YBX3-213ENST00000542641 TRAPPC2BP0DI82 140 aa9.13□□□□□ -0.95
YBX3-213ENST00000542641 SULT1A3P0DMM9 295 aa9.13□□□□□ -0.95
YBX3-213ENST00000542641 SULT1A4P0DMN0 295 aa9.13□□□□□ -0.95
YBX3-213ENST00000542641 EGR2P11161 476 aaPredicted RBP9.13□□□□□ -0.95
YBX3-213ENST00000542641 ECSCRQ19T08 205 aa9.13□□□□□ -0.95
YBX3-213ENST00000542641 GGNBP1Q5YKI7 109 aa9.13□□□□□ -0.95
YBX3-213ENST00000542641 CENPVQ7Z7K6 275 aaPredicted RBP9.13□□□□□ -0.95
YBX3-213ENST00000542641 STPG2Q8N412 459 aa9.13□□□□□ -0.95
YBX3-213ENST00000542641 LFNGQ8NES3 379 aa9.13□□□□□ -0.95
YBX3-213ENST00000542641 OR1L8Q8NGR8 309 aa9.13□□□□□ -0.95
YBX3-213ENST00000542641 OR5B3Q8NH48 314 aa9.13□□□□□ -0.95
YBX3-213ENST00000542641 HINT2Q9BX68 163 aa9.13□□□□□ -0.95
YBX3-213ENST00000542641 QTRT1Q9BXR0 403 aaKnown RBP9.13□□□□□ -0.95
YBX3-213ENST00000542641 GON7Q9BXV9 100 aa9.13□□□□□ -0.95
YBX3-213ENST00000542641 FBXO7Q9Y3I1 522 aa9.13□□□□□ -0.95
YBX3-213ENST00000542641 C2CD3Q4AC94 2353 aa9.13□□□□□ -0.95
YBX3-213ENST00000542641 TRAV41A0A0B4J266 112 aa9.12□□□□□ -0.95
YBX3-213ENST00000542641 E7EUB6 86 aa9.12□□□□□ -0.95
YBX3-213ENST00000542641 G3V318 75 aa9.12□□□□□ -0.95
YBX3-213ENST00000542641 ST8SIA3O43173 380 aa9.12□□□□□ -0.95
YBX3-213ENST00000542641 SSNA1O43805 119 aa9.12□□□□□ -0.95
YBX3-213ENST00000542641 IFNA17P01571 189 aa9.12□□□□□ -0.95
YBX3-213ENST00000542641 APELAP0DMC3 54 aa9.12□□□□□ -0.95
YBX3-213ENST00000542641 HSPE1P61604 102 aaKnown RBP9.12□□□□□ -0.95
YBX3-213ENST00000542641 SMCO1Q147U7 214 aa9.12□□□□□ -0.95
YBX3-213ENST00000542641 AKIRIN2Q53H80 203 aa9.12□□□□□ -0.95
YBX3-213ENST00000542641 THOC7Q6I9Y2 204 aaKnown RBP9.12□□□□□ -0.95
YBX3-213ENST00000542641 UNQ5815/PRO19632Q6UWF5 114 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms