RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 MYO9AB2RTY4 2548 aa2.53□□□□□ -2
USP48-215ENST00000534705 ANKHD1Q8IWZ3 2542 aaKnown RBP2.52□□□□□ -2.01
USP48-215ENST00000534705 ROS1P08922 2347 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 POLQO75417 2590 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 TRAV39A0A0B4J263 110 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 FAM168BA1KXE4 195 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.52□□□□□ -2.01
USP48-215ENST00000534705 TNFRSF11BO00300 401 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 CCL25O15444 150 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 CXCL13O43927 109 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 YPEL1O60688 119 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 ZNF253O75346 499 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 REM1O75628 298 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 FCN3O75636 299 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 MMP23AO75900 390 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 GLSO94925 669 aaPredicted RBP2.52□□□□□ -2.01
USP48-215ENST00000534705 GPR75O95800 540 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 IFNA21P01568 189 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 KLK1P06870 262 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 SFTA3P0C7M3 94 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 SLC35E2P0CK97 266 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 OR12D1P0DN82 309 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 CD37P11049 281 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 LAMP1P11279 417 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 CPMP14384 443 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 COX5AP20674 150 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 SERPINA2P20848 420 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 DTYMKP23919 212 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 PTGDSP41222 190 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 IDH2P48735 452 aaKnown RBP2.52□□□□□ -2.01
USP48-215ENST00000534705 INPP1P49441 399 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 SULT1A1P50225 295 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 SULT1A2P50226 295 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 OR10A3P58181 314 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 AP3S2P59780 193 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 ERVS71-1P61550 626 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 LYZP61626 148 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 SLC35A1P78382 337 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 ARG2P78540 354 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 HMGCS1Q01581 520 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 IL15RAQ13261 267 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 LAGE3Q14657 143 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 HERPUD1Q15011 391 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 EBPQ15125 230 aaKnown RBP2.52□□□□□ -2.01
USP48-215ENST00000534705 ELOBQ15370 118 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 CD226Q15762 336 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 MAPK14Q16539 360 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 ZNF791Q3KP31 576 aaPredicted RBP2.52□□□□□ -2.01
USP48-215ENST00000534705 SCGB2B2Q4G0G5 96 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 FAM71E1Q6IPT2 247 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 SLC48A1Q6P1K1 146 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 SFXN4Q6P4A7 337 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 SMARCD3Q6STE5 483 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 APOOLQ6UXV4 268 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 TMPPEQ6ZT21 453 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 SLC25A26Q70HW3 274 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 SLC35D2Q76EJ3 337 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 SSX6Q7RTT6 188 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 GRINAQ7Z429 371 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 ZNF546Q86UE3 836 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 SLC30A8Q8IWU4 369 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 TMEM183AQ8IXX5 376 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 KIR3DL3Q8N743 410 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 ZFP62Q8NB50 900 aaPredicted RBP2.52□□□□□ -2.01
USP48-215ENST00000534705 OR4S1Q8NGB4 309 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 OR6N1Q8NGY5 312 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 PLPPR1Q8TBJ4 325 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 C16orf78Q8WTQ4 265 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 CASTOR1Q8WTX7 329 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 C15orf40Q8WUR7 153 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 SLC25A38Q96DW6 304 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 ZNF75AQ96N20 296 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 YPEL2Q96QA6 119 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 ANGPTL4Q9BY76 406 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 DEFB126Q9BYW3 111 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 SELENOIQ9C0D9 397 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 TMEM38AQ9H6F2 299 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 ADGRL4Q9HBW9 690 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 ESM1Q9NQ30 184 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 PARP11Q9NR21 331 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 VPS29Q9UBQ0 182 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 VAX2Q9UIW0 290 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 FIS1Q9Y3D6 152 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 ZNF337Q9Y3M9 751 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 CHCHD2Q9Y6H1 151 aaPredicted RBP2.52□□□□□ -2.01
USP48-215ENST00000534705 ENPP4Q9Y6X5 453 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 SPG11Q96JI7 2443 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 MAP1AP78559 2803 aaPredicted RBP2.52□□□□□ -2.01
USP48-215ENST00000534705 ARID1AO14497 2285 aa2.52□□□□□ -2.01
USP48-215ENST00000534705 DOCK11Q5JSL3 2073 aa2.51□□□□□ -2.01
USP48-215ENST00000534705 ANK3Q12955 4377 aaKnown RBP2.51□□□□□ -2.01
USP48-215ENST00000534705 TRBV24-1A0A075B6N3 115 aa2.51□□□□□ -2.01
USP48-215ENST00000534705 FXYD6-FXYD2A0A087WZ82 144 aa2.51□□□□□ -2.01
USP48-215ENST00000534705 KANTRA0A1W2PQU2 76 aa2.51□□□□□ -2.01
USP48-215ENST00000534705 A0A1W2PRF3 423 aa2.51□□□□□ -2.01
USP48-215ENST00000534705 A0A1W2PRM7 423 aa2.51□□□□□ -2.01
USP48-215ENST00000534705 OR5H14A6NHG9 310 aa2.51□□□□□ -2.01
USP48-215ENST00000534705 M0R129 80 aa2.51□□□□□ -2.01
USP48-215ENST00000534705 FFAR1O14842 300 aa2.51□□□□□ -2.01
USP48-215ENST00000534705 PPP1R2P9O14990 202 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms