RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 ACTL10Q5JWF8 245 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 SDHAF4Q5VUM1 108 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 LAIR2Q6ISS4 152 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 CYHR1Q6ZMK1 362 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 TMEM25Q86YD3 366 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 CCDC112Q8NEF3 446 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 OR8K1Q8NGG5 319 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 OR10D4PQ8NGN7 298 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 BLNKQ8WV28 456 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 RNF133Q8WVZ7 376 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 APOL4Q9BPW4 351 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 BEX2Q9BXY8 128 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 TMBIM4Q9HC24 238 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 SCML1Q9UN30 329 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 USH1CQ9Y6N9 552 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 U3KQA8 63 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 ANK1P16157 1881 aa1.43□□□□□ -2.18
CD44-233ENST00000531141 MYH9P35579 1960 aaKnown RBP1.43□□□□□ -2.18
CD44-233ENST00000531141 MYH7P12883 1935 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 CADP27708 2225 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 TRBV24-1A0A075B6N3 115 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 IGKV1D-37A0A075B6S9 117 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 PGPA6NDG6 321 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 TLCD2A6NGC4 264 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 GOLGA8KD6RF30 607 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 SMLR1H3BR10 107 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 GOLGA8MH3BSY2 632 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 SULT1C2O00338 296 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 ZW10O43264 779 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 CYTH3O43739 400 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 SH2D1AO60880 128 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 POP7O75817 140 aaKnown RBP1.42□□□□□ -2.18
CD44-233ENST00000531141 ORM1P02763 201 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 GUSBP08236 651 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 PSKH1P11801 424 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 CCL4P13236 92 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 HIST1H1CP16403 213 aaKnown RBP1.42□□□□□ -2.18
CD44-233ENST00000531141 CTLA4P16410 223 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 HMGA1P17096 107 aaKnown RBP1.42□□□□□ -2.18
CD44-233ENST00000531141 M6PRP20645 277 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 GTF2H1P32780 548 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 RPA3P35244 121 aaPredicted RBP1.42□□□□□ -2.18
CD44-233ENST00000531141 ACTR1BP42025 376 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 CDKN2CP42773 168 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 RAP1GDS1P52306 607 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 UBE2KP61086 200 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 BASP1P80723 227 aaKnown RBP1.42□□□□□ -2.18
CD44-233ENST00000531141 STX4Q12846 297 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 CST6Q15828 149 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 IMPG1Q17R60 797 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 FAM45BPQ6NSW5 357 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 ZNF322Q6U7Q0 402 aaPredicted RBP1.42□□□□□ -2.18
CD44-233ENST00000531141 AHSA2Q719I0 299 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 NIT1Q86X76 327 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 LFNGQ8NES3 379 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 ATP6V1C2Q8NEY4 427 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 FAM45AQ8TCE6 357 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 MAL2Q969L2 176 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 PPP1R14BQ96C90 147 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 CMBLQ96DG6 245 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 CMTM5Q96DZ9 223 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 ZMYND19Q96E35 227 aaPredicted RBP1.42□□□□□ -2.18
CD44-233ENST00000531141 SLC25A31Q9H0C2 315 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 DIABLOQ9NR28 239 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 PLEKHJ1Q9NW61 149 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 ATPIF1Q9UII2 106 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 FBXL3Q9UKT7 428 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 PRKDCP78527 4128 aaKnown RBP1.42□□□□□ -2.18
CD44-233ENST00000531141 DENND4CQ5VZ89 1909 aa1.42□□□□□ -2.18
CD44-233ENST00000531141 ZNF106Q9H2Y7 1883 aaKnown RBP1.41□□□□□ -2.18
CD44-233ENST00000531141 SCN8AQ9UQD0 1980 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 TRAV8-3A0A0A6YYJ7 113 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 A0A1B0GX12 115 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 OR5H14A6NHG9 310 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 C9J4A7 227 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 FTCDNL1E5RQL4 147 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 LRRN3E7EW58 273 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 M0QXV9 152 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 M0R036 132 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 OVOL1O14753 267 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 UBDO15205 165 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 TCF21O43680 179 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 SYNGR1O43759 233 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 UGT2B11O75310 529 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 PSMG1O95456 288 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 SNAP29O95721 258 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 RAB36O95755 333 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 IFI30P13284 250 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 GABRA1P14867 456 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 ZNF22P17026 224 aaPredicted RBP1.41□□□□□ -2.18
CD44-233ENST00000531141 MAGEA3P43357 314 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 STC1P52823 247 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 RAB38P57729 211 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 RHOAP61586 193 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 CCL7P80098 99 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 MRPS25P82663 173 aaKnown RBP1.41□□□□□ -2.18
CD44-233ENST00000531141 DR1Q01658 176 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 CD164Q04900 197 aa1.41□□□□□ -2.18
CD44-233ENST00000531141 ZNHIT3Q15649 155 aaPredicted RBP1.41□□□□□ -2.18
CD44-233ENST00000531141 DEFB133Q30KQ1 61 aa1.41□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms