RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 RNASE11Q8TAA1 199 aaKnown RBP12.1□□□□□ -0.47
LSM1-203ENST00000520755 VSTM2AQ8TAG5 236 aa12.1□□□□□ -0.47
LSM1-203ENST00000520755 OR10C1Q96KK4 312 aa12.1□□□□□ -0.47
LSM1-203ENST00000520755 CLCC1Q96S66 551 aa12.1□□□□□ -0.47
LSM1-203ENST00000520755 CACNG5Q9UF02 275 aa12.1□□□□□ -0.47
LSM1-203ENST00000520755 TMED3Q9Y3Q3 217 aa12.1□□□□□ -0.47
LSM1-203ENST00000520755 IGHV7-81A0A0B4J1V7 117 aa12.09□□□□□ -0.47
LSM1-203ENST00000520755 A0A1B0GW64 132 aa12.09□□□□□ -0.47
LSM1-203ENST00000520755 C15orf61A6NNL5 157 aa12.09□□□□□ -0.47
LSM1-203ENST00000520755 ATG12O94817 140 aa12.09□□□□□ -0.47
LSM1-203ENST00000520755 COMPP49747 757 aaPredicted RBP12.09□□□□□ -0.47
LSM1-203ENST00000520755 FCN2Q15485 313 aa12.09□□□□□ -0.47
LSM1-203ENST00000520755 SLC35E3Q7Z769 313 aa12.09□□□□□ -0.47
LSM1-203ENST00000520755 FOXRED2Q8IWF2 684 aa12.09□□□□□ -0.47
LSM1-203ENST00000520755 OR5M8Q8NGP6 311 aa12.09□□□□□ -0.47
LSM1-203ENST00000520755 OR4A5Q8NH83 315 aa12.09□□□□□ -0.47
LSM1-203ENST00000520755 RRNAD1Q96FB5 475 aaKnown RBP12.09□□□□□ -0.47
LSM1-203ENST00000520755 AIFM2Q9BRQ8 373 aa12.09□□□□□ -0.47
LSM1-203ENST00000520755 SERTAD4Q9NUC0 356 aa12.09□□□□□ -0.47
LSM1-203ENST00000520755 CGB1A6NKQ9 187 aa12.08□□□□□ -0.48
LSM1-203ENST00000520755 E7EUB6 86 aa12.08□□□□□ -0.48
LSM1-203ENST00000520755 GOSR2O14653 212 aa12.08□□□□□ -0.48
LSM1-203ENST00000520755 SSNA1O43805 119 aa12.08□□□□□ -0.48
LSM1-203ENST00000520755 PITX3O75364 302 aa12.08□□□□□ -0.48
LSM1-203ENST00000520755 SIX6O95475 246 aa12.08□□□□□ -0.48
LSM1-203ENST00000520755 SULT1A3P0DMM9 295 aa12.08□□□□□ -0.48
LSM1-203ENST00000520755 SULT1A4P0DMN0 295 aa12.08□□□□□ -0.48
LSM1-203ENST00000520755 HLA-GP17693 338 aa12.08□□□□□ -0.48
LSM1-203ENST00000520755 CXCL3P19876 107 aa12.08□□□□□ -0.48
LSM1-203ENST00000520755 PROK1P58294 105 aa12.08□□□□□ -0.48
LSM1-203ENST00000520755 RRAS2P62070 204 aaPredicted RBP12.08□□□□□ -0.48
LSM1-203ENST00000520755 RPL8P62917 257 aaKnown RBP12.08□□□□□ -0.48
LSM1-203ENST00000520755 AARDQ4LEZ3 155 aa12.08□□□□□ -0.48
LSM1-203ENST00000520755 MMD2Q8IY49 270 aa12.08□□□□□ -0.48
LSM1-203ENST00000520755 OR11H7Q8NGC8 314 aa12.08□□□□□ -0.48
LSM1-203ENST00000520755 WDR89Q96FK6 387 aaPredicted RBP12.08□□□□□ -0.48
LSM1-203ENST00000520755 QTRT1Q9BXR0 403 aaKnown RBP12.08□□□□□ -0.48
LSM1-203ENST00000520755 TMEM14BQ9NUH8 114 aa12.08□□□□□ -0.48
LSM1-203ENST00000520755 FOXA2Q9Y261 457 aaPredicted RBP12.08□□□□□ -0.48
LSM1-203ENST00000520755 FBXO7Q9Y3I1 522 aa12.08□□□□□ -0.48
LSM1-203ENST00000520755 LINC01548A6NM66 108 aa12.07□□□□□ -0.48
LSM1-203ENST00000520755 IGHG2P01859 326 aa12.07□□□□□ -0.48
LSM1-203ENST00000520755 FGF2P09038 288 aa12.07□□□□□ -0.48
LSM1-203ENST00000520755 SLC25A6P12236 298 aa12.07□□□□□ -0.48
LSM1-203ENST00000520755 H2BFSP57053 126 aa12.07□□□□□ -0.48
LSM1-203ENST00000520755 CX3CL1P78423 397 aa12.07□□□□□ -0.48
LSM1-203ENST00000520755 SMCO1Q147U7 214 aa12.07□□□□□ -0.48
LSM1-203ENST00000520755 TNXAQ16473 311 aa12.07□□□□□ -0.48
LSM1-203ENST00000520755 KLHDC1Q8N7A1 406 aa12.07□□□□□ -0.48
LSM1-203ENST00000520755 C3orf56Q8N813 242 aa12.07□□□□□ -0.48
LSM1-203ENST00000520755 COA4Q9NYJ1 87 aa12.07□□□□□ -0.48
LSM1-203ENST00000520755 MGAT4CQ9UBM8 478 aa12.07□□□□□ -0.48
LSM1-203ENST00000520755 LINC00527Q9UJ94 153 aa12.07□□□□□ -0.48
LSM1-203ENST00000520755 COL6A5A8TX70 2615 aa12.07□□□□□ -0.48
LSM1-203ENST00000520755 hCG_2014768A0A024R1R8 64 aa12.06□□□□□ -0.48
LSM1-203ENST00000520755 PIGBOS1A0A0B4J2F0 54 aa12.06□□□□□ -0.48
LSM1-203ENST00000520755 A0A1B0GU03 582 aa12.06□□□□□ -0.48
LSM1-203ENST00000520755 ST8SIA3O43173 380 aa12.06□□□□□ -0.48
LSM1-203ENST00000520755 KCNAB3O43448 404 aa12.06□□□□□ -0.48
LSM1-203ENST00000520755 NXPH3O95157 252 aa12.06□□□□□ -0.48
LSM1-203ENST00000520755 GNB1P62873 340 aa12.06□□□□□ -0.48
LSM1-203ENST00000520755 C11orf87Q6NUJ2 197 aa12.06□□□□□ -0.48
LSM1-203ENST00000520755 ZNF429Q86V71 674 aa12.06□□□□□ -0.48
LSM1-203ENST00000520755 ZBTB8BQ8NAP8 495 aaPredicted RBP12.06□□□□□ -0.48
LSM1-203ENST00000520755 OR4D5Q8NGN0 318 aa12.06□□□□□ -0.48
LSM1-203ENST00000520755 WFDC12Q8WWY7 111 aa12.06□□□□□ -0.48
LSM1-203ENST00000520755 NOL4LQ96MY1 436 aaPredicted RBP12.06□□□□□ -0.48
LSM1-203ENST00000520755 MED28Q9H204 178 aa12.06□□□□□ -0.48
LSM1-203ENST00000520755 PRNDQ9UKY0 176 aa12.06□□□□□ -0.48
LSM1-203ENST00000520755 TEX22C9J3V5 150 aa12.05□□□□□ -0.48
LSM1-203ENST00000520755 ATP6V0E1O15342 81 aa12.05□□□□□ -0.48
LSM1-203ENST00000520755 SNAPC5O75971 98 aa12.05□□□□□ -0.48
LSM1-203ENST00000520755 IFNA21P01568 189 aa12.05□□□□□ -0.48
LSM1-203ENST00000520755 OPN1MWP04001 364 aa12.05□□□□□ -0.48
LSM1-203ENST00000520755 OPN1MW2P0DN77 364 aa12.05□□□□□ -0.48
LSM1-203ENST00000520755 OPN1MW3P0DN78 364 aa12.05□□□□□ -0.48
LSM1-203ENST00000520755 EGR2P11161 476 aaPredicted RBP12.05□□□□□ -0.48
LSM1-203ENST00000520755 MAS1LP35410 378 aa12.05□□□□□ -0.48
LSM1-203ENST00000520755 IL15RAQ13261 267 aa12.05□□□□□ -0.48
LSM1-203ENST00000520755 IAH1Q2TAA2 248 aaPredicted RBP12.05□□□□□ -0.48
LSM1-203ENST00000520755 ZNF562Q6V9R5 426 aa12.05□□□□□ -0.48
LSM1-203ENST00000520755 OR4A16Q8NH70 328 aa12.05□□□□□ -0.48
LSM1-203ENST00000520755 ABHD5Q8WTS1 349 aa12.05□□□□□ -0.48
LSM1-203ENST00000520755 SRSF12Q8WXF0 261 aaKnown RBP12.05□□□□□ -0.48
LSM1-203ENST00000520755 SPIN2AQ99865 258 aa12.05□□□□□ -0.48
LSM1-203ENST00000520755 SPIN2BQ9BPZ2 258 aa12.05□□□□□ -0.48
LSM1-203ENST00000520755 FAM103A1Q9BTL3 118 aaKnown RBP12.05□□□□□ -0.48
LSM1-203ENST00000520755 PARP11Q9NR21 331 aa12.05□□□□□ -0.48
LSM1-203ENST00000520755 OR51B2Q9Y5P1 312 aa12.05□□□□□ -0.48
LSM1-203ENST00000520755 TEX50A0A1B0GTY4 177 aa12.04□□□□□ -0.48
LSM1-203ENST00000520755 C13orf42A0A1B0GVH6 325 aa12.04□□□□□ -0.48
LSM1-203ENST00000520755 FAM25EA8MYX2 175 aa12.04□□□□□ -0.48
LSM1-203ENST00000520755 AP4M1O00189 453 aa12.04□□□□□ -0.48
LSM1-203ENST00000520755 RPL27AP46776 148 aaKnown RBP12.04□□□□□ -0.48
LSM1-203ENST00000520755 KRTAP10-3P60369 221 aa12.04□□□□□ -0.48
LSM1-203ENST00000520755 SRSF4Q08170 494 aaKnown RBP12.04□□□□□ -0.48
LSM1-203ENST00000520755 FXYD3Q14802 87 aa12.04□□□□□ -0.48
LSM1-203ENST00000520755 SPINK9Q5DT21 86 aa12.04□□□□□ -0.48
LSM1-203ENST00000520755 ASPHD1Q5U4P2 390 aa12.04□□□□□ -0.48
LSM1-203ENST00000520755 THOC7Q6I9Y2 204 aaKnown RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms