RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 RPS19P39019 145 aaKnown RBP13.25□□□□□ -0.29
DDX41-217ENST00000515562 TAS2R46P59540 309 aa13.25□□□□□ -0.29
DDX41-217ENST00000515562 OR2B8PP59922 312 aa13.25□□□□□ -0.29
DDX41-217ENST00000515562 CD300EQ496F6 205 aaPredicted RBP13.25□□□□□ -0.29
DDX41-217ENST00000515562 CASC10Q5T4H9 136 aa13.25□□□□□ -0.29
DDX41-217ENST00000515562 TSPAN14Q8NG11 270 aa13.25□□□□□ -0.29
DDX41-217ENST00000515562 YIPF6Q96EC8 236 aa13.25□□□□□ -0.29
DDX41-217ENST00000515562 CCDC140Q96MF4 163 aa13.25□□□□□ -0.29
DDX41-217ENST00000515562 SPATA25Q9BR10 227 aa13.25□□□□□ -0.29
DDX41-217ENST00000515562 SRSF8Q9BRL6 282 aaKnown RBP13.25□□□□□ -0.29
DDX41-217ENST00000515562 COMMD5Q9GZQ3 224 aa13.25□□□□□ -0.29
DDX41-217ENST00000515562 DMRT1Q9Y5R6 373 aa13.25□□□□□ -0.29
DDX41-217ENST00000515562 DNAH7Q8WXX0 4024 aa13.25□□□□□ -0.29
DDX41-217ENST00000515562 C2orf70A6NJV1 201 aa13.24□□□□□ -0.29
DDX41-217ENST00000515562 NDUFB8O95169 186 aa13.24□□□□□ -0.29
DDX41-217ENST00000515562 TAS2R20P59543 309 aa13.24□□□□□ -0.29
DDX41-217ENST00000515562 THOC7Q6I9Y2 204 aaKnown RBP13.24□□□□□ -0.29
DDX41-217ENST00000515562 GPHB5Q86YW7 130 aa13.24□□□□□ -0.29
DDX41-217ENST00000515562 DMBX1Q8NFW5 382 aa13.24□□□□□ -0.29
DDX41-217ENST00000515562 MOB3AQ96BX8 217 aa13.24□□□□□ -0.29
DDX41-217ENST00000515562 CXorf58Q96LI9 332 aa13.24□□□□□ -0.29
DDX41-217ENST00000515562 TMEM140Q9NV12 185 aa13.24□□□□□ -0.29
DDX41-217ENST00000515562 SLC2A8Q9NY64 477 aa13.24□□□□□ -0.29
DDX41-217ENST00000515562 TECRQ9NZ01 308 aaKnown RBP13.24□□□□□ -0.29
DDX41-217ENST00000515562 IGLV11-55A0A075B6I3 123 aa13.23□□□□□ -0.29
DDX41-217ENST00000515562 TRBV7-1A0A0A6YYK4 115 aa13.23□□□□□ -0.29
DDX41-217ENST00000515562 CGB1A6NKQ9 187 aa13.23□□□□□ -0.29
DDX41-217ENST00000515562 UPK2O00526 184 aa13.23□□□□□ -0.29
DDX41-217ENST00000515562 S1PR2O95136 353 aa13.23□□□□□ -0.29
DDX41-217ENST00000515562 OR2C1O95371 312 aa13.23□□□□□ -0.29
DDX41-217ENST00000515562 HLA-AP01891 365 aaKnown RBP13.23□□□□□ -0.29
DDX41-217ENST00000515562 REG1AP05451 166 aa13.23□□□□□ -0.29
DDX41-217ENST00000515562 LYL1P12980 280 aa13.23□□□□□ -0.29
DDX41-217ENST00000515562 FOLR2P14207 255 aa13.23□□□□□ -0.29
DDX41-217ENST00000515562 MYOD1P15172 320 aa13.23□□□□□ -0.29
DDX41-217ENST00000515562 GNRHRP30968 328 aa13.23□□□□□ -0.29
DDX41-217ENST00000515562 CD81P60033 236 aa13.23□□□□□ -0.29
DDX41-217ENST00000515562 ERVK-16P61578 105 aa13.23□□□□□ -0.29
DDX41-217ENST00000515562 LSM3P62310 102 aaKnown RBP13.23□□□□□ -0.29
DDX41-217ENST00000515562 DHRS11Q6UWP2 260 aa13.23□□□□□ -0.29
DDX41-217ENST00000515562 CLEC19AQ6UXS0 136 aa13.23□□□□□ -0.29
DDX41-217ENST00000515562 ADAMTSL5Q6ZMM2 481 aa13.23□□□□□ -0.29
DDX41-217ENST00000515562 OR5H2Q8NGV7 314 aa13.23□□□□□ -0.29
DDX41-217ENST00000515562 SLC25A46Q96AG3 418 aa13.23□□□□□ -0.29
DDX41-217ENST00000515562 ISOC1Q96CN7 298 aa13.23□□□□□ -0.29
DDX41-217ENST00000515562 ZNF2Q9BSG1 426 aaPredicted RBP13.23□□□□□ -0.29
DDX41-217ENST00000515562 PALMDQ9NP74 551 aa13.23□□□□□ -0.29
DDX41-217ENST00000515562 ZC4H2Q9NQZ6 224 aa13.23□□□□□ -0.29
DDX41-217ENST00000515562 IGLC7A0M8Q6 106 aa13.22□□□□□ -0.29
DDX41-217ENST00000515562 A8MWP6 167 aa13.22□□□□□ -0.29
DDX41-217ENST00000515562 CYB5BO43169 146 aa13.22□□□□□ -0.29
DDX41-217ENST00000515562 TPPPO94811 219 aa13.22□□□□□ -0.29
DDX41-217ENST00000515562 IGHV3-23P01764 117 aa13.22□□□□□ -0.29
DDX41-217ENST00000515562 NAT1P18440 290 aa13.22□□□□□ -0.29
DDX41-217ENST00000515562 PRSS3P35030 304 aa13.22□□□□□ -0.29
DDX41-217ENST00000515562 RFX2P48378 723 aa13.22□□□□□ -0.29
DDX41-217ENST00000515562 HAGHQ16775 308 aa13.22□□□□□ -0.29
DDX41-217ENST00000515562 DEFB114Q30KQ6 69 aa13.22□□□□□ -0.29
DDX41-217ENST00000515562 FAM106AQ4KMX7 169 aa13.22□□□□□ -0.29
DDX41-217ENST00000515562 CMTM1Q8IZ96 169 aa13.22□□□□□ -0.29
DDX41-217ENST00000515562 QTRT1Q9BXR0 403 aaKnown RBP13.22□□□□□ -0.29
DDX41-217ENST00000515562 THYN1Q9P016 225 aa13.22□□□□□ -0.29
DDX41-217ENST00000515562 MARCH11A6NNE9 402 aa13.21□□□□□ -0.29
DDX41-217ENST00000515562 RLN1P04808 185 aa13.21□□□□□ -0.29
DDX41-217ENST00000515562 F2RP25116 425 aa13.21□□□□□ -0.29
DDX41-217ENST00000515562 HSD17B13Q7Z5P4 300 aaPredicted RBP13.21□□□□□ -0.29
DDX41-217ENST00000515562 NEURL2Q9BR09 285 aa13.21□□□□□ -0.29
DDX41-217ENST00000515562 PLEKHA3Q9HB20 300 aa13.21□□□□□ -0.29
DDX41-217ENST00000515562 S4R3C0 116 aa13.21□□□□□ -0.29
DDX41-217ENST00000515562 TRAV3A0A0B4J244 114 aa13.2□□□□□ -0.3
DDX41-217ENST00000515562 MFSD2BA6NFX1 497 aa13.2□□□□□ -0.3
DDX41-217ENST00000515562 PMP2P02689 132 aa13.2□□□□□ -0.3
DDX41-217ENST00000515562 IFNA6P05013 189 aa13.2□□□□□ -0.3
DDX41-217ENST00000515562 CBLN1P23435 193 aa13.2□□□□□ -0.3
DDX41-217ENST00000515562 GUCA2BQ16661 112 aa13.2□□□□□ -0.3
DDX41-217ENST00000515562 GDPD1Q8N9F7 314 aa13.2□□□□□ -0.3
DDX41-217ENST00000515562 OR6F1Q8NGZ6 308 aa13.2□□□□□ -0.3
DDX41-217ENST00000515562 EDA2RQ9HAV5 297 aa13.2□□□□□ -0.3
DDX41-217ENST00000515562 CEPT1Q9Y6K0 416 aa13.2□□□□□ -0.3
DDX41-217ENST00000515562 SMIM31A0A1B0GVY4 71 aa13.19□□□□□ -0.3
DDX41-217ENST00000515562 ZNF320A2RRD8 509 aa13.19□□□□□ -0.3
DDX41-217ENST00000515562 TMEM213A2RRL7 107 aa13.19□□□□□ -0.3
DDX41-217ENST00000515562 ZNF785A8K8V0 405 aa13.19□□□□□ -0.3
DDX41-217ENST00000515562 GPR31O00270 319 aa13.19□□□□□ -0.3
DDX41-217ENST00000515562 PGLYRP1O75594 196 aaPredicted RBP13.19□□□□□ -0.3
DDX41-217ENST00000515562 APOA1P02647 267 aa13.19□□□□□ -0.3
DDX41-217ENST00000515562 HRH1P35367 487 aa13.19□□□□□ -0.3
DDX41-217ENST00000515562 CADM3Q8N126 398 aa13.19□□□□□ -0.3
DDX41-217ENST00000515562 DGCR14Q96DF8 476 aaKnown RBP13.19□□□□□ -0.3
DDX41-217ENST00000515562 CMTM3Q96MX0 182 aa13.19□□□□□ -0.3
DDX41-217ENST00000515562 FXYD6Q9H0Q3 95 aa13.19□□□□□ -0.3
DDX41-217ENST00000515562 SCPEP1Q9HB40 452 aa13.19□□□□□ -0.3
DDX41-217ENST00000515562 CLEC3BP05452 202 aa13.18□□□□□ -0.3
DDX41-217ENST00000515562 EIF4EP06730 217 aaKnown RBP13.18□□□□□ -0.3
DDX41-217ENST00000515562 TRAPPC2P0DI81 140 aa13.18□□□□□ -0.3
DDX41-217ENST00000515562 TRAPPC2BP0DI82 140 aa13.18□□□□□ -0.3
DDX41-217ENST00000515562 EDN2P20800 178 aa13.18□□□□□ -0.3
DDX41-217ENST00000515562 PTBP1P26599 531 aaKnown RBP eCLIP13.18□□□□□ -0.3
DDX41-217ENST00000515562 S100GP29377 79 aa13.18□□□□□ -0.3
DDX41-217ENST00000515562 GPR183P32249 361 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms