RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 PLEKHA2Q9HB19 425 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 PLSCR3Q9NRY6 295 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 COMMD9Q9P000 198 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 THYN1Q9P016 225 aa6.32□□□□□ -1.4
USP40-216ENST00000485943 LINC01548A6NM66 108 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 MARCH11A6NNE9 402 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 H3BUA1 57 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 CCL24O00175 119 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 FCN1O00602 326 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 RBFOX2O43251 390 aaKnown RBP eCLIP6.31□□□□□ -1.4
USP40-216ENST00000485943 B3GALNT1O75752 331 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 S1PR2O95136 353 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 IGHV3-11P01762 117 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 IGHG4P01861 327 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 OR8U8P0C7N1 319 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 OR9G9P0C7N8 305 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 HLA-GP17693 338 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 RAB9AP51151 201 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 KRTAP10-3P60369 221 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 RPL30P62888 115 aaKnown RBP6.31□□□□□ -1.4
USP40-216ENST00000485943 DCTN2Q13561 401 aaKnown RBP6.31□□□□□ -1.4
USP40-216ENST00000485943 PRSS8Q16651 343 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 FBLN7Q53RD9 439 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 C10orf99Q6UWK7 81 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 TMED4Q7Z7H5 227 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 LYSMD2Q8IV50 215 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 SLC35G3Q8N808 338 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 OR11H1Q8NG94 326 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 MARCH1Q8TCQ1 289 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 MIXL1Q9H2W2 232 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 ZMAT4Q9H898 229 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 SLC2A9Q9NRM0 540 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 TMEM140Q9NV12 185 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 PRNDQ9UKY0 176 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 WNK1Q9H4A3 2382 aa6.31□□□□□ -1.4
USP40-216ENST00000485943 C3orf85A0A1B0GTC6 90 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 LINC00854A0A1B0GVQ3 168 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 RAMP3O60896 148 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 SCGB2A1O75556 95 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 LY86O95711 162 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 IFNA17P01571 189 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 AKR1C4P17516 323 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 PI3P19957 117 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 PTBP1P26599 531 aaKnown RBP eCLIP6.3□□□□□ -1.46e-9■■■■■ 36.1
USP40-216ENST00000485943 G6PCP35575 357 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 CDX1P47902 265 aaPredicted RBP6.3□□□□□ -1.4
USP40-216ENST00000485943 UCP3P55916 312 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 ATP5G2Q06055 141 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 ZNF616Q08AN1 781 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 FAM209BQ5JX69 171 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 THOC7Q6I9Y2 204 aaKnown RBP6.3□□□□□ -1.4
USP40-216ENST00000485943 OR4A47Q6IF82 309 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 FAAP20Q6NZ36 180 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 HSD17B13Q7Z5P4 300 aaPredicted RBP6.3□□□□□ -1.4
USP40-216ENST00000485943 OR51S1Q8NGJ8 323 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 OR4C16Q8NGL9 310 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 OR1L8Q8NGR8 309 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 OR13C8Q8NGS7 320 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 CASTOR1Q8WTX7 329 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 C4orf3Q8WVX3 66 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 DDB2Q92466 427 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 UBE2E2Q96LR5 201 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 ELOVL1Q9BW60 279 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 ZNF430Q9H8G1 570 aaPredicted RBP6.3□□□□□ -1.4
USP40-216ENST00000485943 BET1LQ9NYM9 111 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 ZNF580Q9UK33 172 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 ANAPC10Q9UM13 185 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 OR51B2Q9Y5P1 312 aa6.3□□□□□ -1.4
USP40-216ENST00000485943 PLXNB1O43157 2135 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 FAM223BA6NKX1 122 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 LINC01619G3V211 115 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 ARPC1BO15143 372 aaKnown RBP6.29□□□□□ -1.4
USP40-216ENST00000485943 GSTZ1O43708 216 aaPredicted RBP6.29□□□□□ -1.4
USP40-216ENST00000485943 PROP1O75360 226 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 IGLV2-23P01705 113 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 CTSDP07339 412 aaPredicted RBP6.29□□□□□ -1.4
USP40-216ENST00000485943 HIST1H1BP16401 226 aaKnown RBP6.29□□□□□ -1.4
USP40-216ENST00000485943 ZP3P21754 424 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 SNCAP37840 140 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 HOXA1P49639 335 aaPredicted RBP6.29□□□□□ -1.4
USP40-216ENST00000485943 SRPXP78539 464 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 ERHP84090 104 aaKnown RBP6.29□□□□□ -1.4
USP40-216ENST00000485943 DHODHQ02127 395 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 PJVKQ0ZLH3 352 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 SURF2Q15527 256 aaPredicted RBP6.29□□□□□ -1.4
USP40-216ENST00000485943 RPEL1Q2QD12 228 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 DEFB136Q30KP8 78 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 SLC25A24Q6NUK1 477 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 C1QL4Q86Z23 238 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 FAM223AQ8IWN6 122 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 GDPD1Q8N9F7 314 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 OR1N2Q8NGR9 330 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 TMEM167AQ8TBQ9 72 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 S100ZQ8WXG8 99 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 C5orf30Q96GV9 206 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 USMG5Q96IX5 58 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 DUX3Q96PT4 197 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 OR4C12Q96R67 309 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 QTRT1Q9BXR0 403 aaKnown RBP6.29□□□□□ -1.4
USP40-216ENST00000485943 GNB4Q9HAV0 340 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms