RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 LPCAT3Q6P1A2 487 aa9.14□□□□□ -0.95
SYNE1-221ENST00000472563 GPR141Q7Z602 305 aa9.14□□□□□ -0.95
SYNE1-221ENST00000472563 CADM3Q8N126 398 aa9.14□□□□□ -0.95
SYNE1-221ENST00000472563 DGCR14Q96DF8 476 aaKnown RBP9.14□□□□□ -0.95
SYNE1-221ENST00000472563 FANCD2OSQ96PS1 177 aa9.14□□□□□ -0.95
SYNE1-221ENST00000472563 SRSF8Q9BRL6 282 aaKnown RBP9.14□□□□□ -0.95
SYNE1-221ENST00000472563 FXYD6Q9H0Q3 95 aa9.14□□□□□ -0.95
SYNE1-221ENST00000472563 SIGLEC8Q9NYZ4 499 aa9.14□□□□□ -0.95
SYNE1-221ENST00000472563 TENM3Q9P273 2699 aa9.13□□□□□ -0.95
SYNE1-221ENST00000472563 TRAV3A0A0B4J244 114 aa9.13□□□□□ -0.95
SYNE1-221ENST00000472563 CGB1A6NKQ9 187 aa9.13□□□□□ -0.95
SYNE1-221ENST00000472563 FAM25AB3EWG3 89 aa9.13□□□□□ -0.95
SYNE1-221ENST00000472563 FAM25CB3EWG5 89 aa9.13□□□□□ -0.95
SYNE1-221ENST00000472563 FAM25GB3EWG6 89 aa9.13□□□□□ -0.95
SYNE1-221ENST00000472563 BMPR1BO00238 502 aa9.13□□□□□ -0.95
SYNE1-221ENST00000472563 RLN1P04808 185 aa9.13□□□□□ -0.95
SYNE1-221ENST00000472563 GP9P14770 177 aa9.13□□□□□ -0.95
SYNE1-221ENST00000472563 MYOD1P15172 320 aa9.13□□□□□ -0.95
SYNE1-221ENST00000472563 HIST1H1BP16401 226 aaKnown RBP9.13□□□□□ -0.95
SYNE1-221ENST00000472563 CTRB1P17538 263 aa9.13□□□□□ -0.95
SYNE1-221ENST00000472563 CTRB2Q6GPI1 263 aa9.13□□□□□ -0.95
SYNE1-221ENST00000472563 C19orf35Q6ZS72 473 aa9.13□□□□□ -0.95
SYNE1-221ENST00000472563 DMBX1Q8NFW5 382 aa9.13□□□□□ -0.95
SYNE1-221ENST00000472563 RSRP1Q9BUV0 290 aa9.13□□□□□ -0.95
SYNE1-221ENST00000472563 COMMD5Q9GZQ3 224 aa9.13□□□□□ -0.95
SYNE1-221ENST00000472563 FAM212BQ9NTI7 297 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-221ENST00000472563 TMEM140Q9NV12 185 aa9.13□□□□□ -0.95
SYNE1-221ENST00000472563 FBXL7Q9UJT9 491 aa9.13□□□□□ -0.95
SYNE1-221ENST00000472563 DMRT1Q9Y5R6 373 aa9.13□□□□□ -0.95
SYNE1-221ENST00000472563 MARCH11A6NNE9 402 aa9.12□□□□□ -0.95
SYNE1-221ENST00000472563 NDUFB8O95169 186 aa9.12□□□□□ -0.95
SYNE1-221ENST00000472563 CSN3P07498 182 aa9.12□□□□□ -0.95
SYNE1-221ENST00000472563 S100GP29377 79 aa9.12□□□□□ -0.95
SYNE1-221ENST00000472563 LPAR6P43657 344 aa9.12□□□□□ -0.95
SYNE1-221ENST00000472563 UCP3P55916 312 aa9.12□□□□□ -0.95
SYNE1-221ENST00000472563 ERVK-16P61578 105 aa9.12□□□□□ -0.95
SYNE1-221ENST00000472563 ZNF585BQ52M93 769 aa9.12□□□□□ -0.95
SYNE1-221ENST00000472563 HAPLN4Q86UW8 402 aa9.12□□□□□ -0.95
SYNE1-221ENST00000472563 C15orf40Q8WUR7 153 aa9.12□□□□□ -0.95
SYNE1-221ENST00000472563 FCAMRQ8WWV6 532 aa9.12□□□□□ -0.95
SYNE1-221ENST00000472563 IGLV11-55A0A075B6I3 123 aa9.11□□□□□ -0.95
SYNE1-221ENST00000472563 IGLC7A0M8Q6 106 aa9.11□□□□□ -0.95
SYNE1-221ENST00000472563 H0Y980 276 aa9.11□□□□□ -0.95
SYNE1-221ENST00000472563 DEFA4P12838 97 aa9.11□□□□□ -0.95
SYNE1-221ENST00000472563 RPA2P15927 270 aa9.11□□□□□ -0.95
SYNE1-221ENST00000472563 TBPP20226 339 aa9.11□□□□□ -0.95
SYNE1-221ENST00000472563 THOC7Q6I9Y2 204 aaKnown RBP9.11□□□□□ -0.95
SYNE1-221ENST00000472563 HSD17B13Q7Z5P4 300 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-221ENST00000472563 SLC38A6Q8IZM9 456 aa9.11□□□□□ -0.95
SYNE1-221ENST00000472563 ABHD1Q96SE0 405 aa9.11□□□□□ -0.95
SYNE1-221ENST00000472563 QTRT1Q9BXR0 403 aaKnown RBP9.11□□□□□ -0.95
SYNE1-221ENST00000472563 PEMTQ9UBM1 199 aa9.11□□□□□ -0.95
SYNE1-221ENST00000472563 EXTL2Q9UBQ6 330 aa9.11□□□□□ -0.95
SYNE1-221ENST00000472563 KLK11Q9UBX7 282 aa9.11□□□□□ -0.95
SYNE1-221ENST00000472563 MTFP1Q9UDX5 166 aa9.11□□□□□ -0.95
SYNE1-221ENST00000472563 TEX50A0A1B0GTY4 177 aa9.1□□□□□ -0.95
SYNE1-221ENST00000472563 M0QYG6 137 aa9.1□□□□□ -0.95
SYNE1-221ENST00000472563 GGCTO75223 188 aaKnown RBP9.1□□□□□ -0.95
SYNE1-221ENST00000472563 KRASP01116 189 aa9.1□□□□□ -0.95
SYNE1-221ENST00000472563 IFNA6P05013 189 aa9.1□□□□□ -0.95
SYNE1-221ENST00000472563 REG1AP05451 166 aa9.1□□□□□ -0.95
SYNE1-221ENST00000472563 TRAPPC2P0DI81 140 aa9.1□□□□□ -0.95
SYNE1-221ENST00000472563 TRAPPC2BP0DI82 140 aa9.1□□□□□ -0.95
SYNE1-221ENST00000472563 MECP2P51608 486 aaKnown RBP9.1□□□□□ -0.95
SYNE1-221ENST00000472563 SPCS2Q15005 226 aa9.1□□□□□ -0.95
SYNE1-221ENST00000472563 PHLDA2Q53GA4 152 aa9.1□□□□□ -0.95
SYNE1-221ENST00000472563 Q8N1Y9 231 aa9.1□□□□□ -0.95
SYNE1-221ENST00000472563 ARRDC1Q8N5I2 433 aa9.1□□□□□ -0.95
SYNE1-221ENST00000472563 OR1L8Q8NGR8 309 aa9.1□□□□□ -0.95
SYNE1-221ENST00000472563 OR52I2Q8NH67 350 aa9.1□□□□□ -0.95
SYNE1-221ENST00000472563 EEF1AKMT3Q96AZ1 226 aa9.1□□□□□ -0.95
SYNE1-221ENST00000472563 CXorf58Q96LI9 332 aa9.1□□□□□ -0.95
SYNE1-221ENST00000472563 CCDC140Q96MF4 163 aa9.1□□□□□ -0.95
SYNE1-221ENST00000472563 ASCL2Q99929 193 aa9.1□□□□□ -0.95
SYNE1-221ENST00000472563 BCL7BQ9BQE9 202 aa9.1□□□□□ -0.95
SYNE1-221ENST00000472563 U3KQK5 164 aa9.1□□□□□ -0.95
SYNE1-221ENST00000472563 TNCP24821 2201 aa9.1□□□□□ -0.95
SYNE1-221ENST00000472563 TRBV7-1A0A0A6YYK4 115 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 PPP5D1E7EU14 171 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 LGALS9O00182 355 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 SNAPC5O75971 98 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 OR2C1O95371 312 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 CD3DP04234 171 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 FRMD6-AS1P0C7T7 363 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 PTBP1P26599 531 aaKnown RBP eCLIP9.09□□□□□ -0.95
SYNE1-221ENST00000472563 G6PCP35575 357 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 TMBIM6P55061 237 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 RNASE10Q5GAN6 216 aaKnown RBP9.09□□□□□ -0.95
SYNE1-221ENST00000472563 LCN12Q6JVE5 192 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 CLEC19AQ6UXS0 136 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 TBC1D26Q86UD7 250 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 LHFPL1Q86WI0 220 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 GPHB5Q86YW7 130 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 CLVS1Q8IUQ0 354 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-221ENST00000472563 Q8N402 240 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 GDPD1Q8N9F7 314 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 OR2K2Q8NGT1 345 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 RAB2BQ8WUD1 216 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 WWC2-AS2Q96NR7 200 aa9.09□□□□□ -0.95
SYNE1-221ENST00000472563 TSC22D3Q99576 134 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms