RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 PCTPQ9UKL6 214 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 IER3IP1Q9Y5U9 82 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 ENPP4Q9Y6X5 453 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 FMN1Q68DA7 1419 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 GAPVD1Q14C86 1478 aa3.6□□□□□ -1.83
CCDC88A-210ENST00000468534 KDM5AP29375 1690 aaKnown RBP3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 IGKV1-8A0A0C4DH67 115 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 IGHV1-69-2A0A0G2JMI3 117 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 A0A0J9YWU9 116 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 TEX48A0A1B0GUV7 120 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 CCDC179H3BU77 68 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 GABARAPH6UMI1 98 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 J3QRK9 145 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 ZSCAN5DPP0CG00 497 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 CTSEP14091 401 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 PGAM2P15259 253 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 ZNF19P17023 458 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 IGHV1-2P23083 117 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 OPRM1P35372 400 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 PSMB3P49720 205 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 HERVK_113P63121 156 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 VMA21Q3ZAQ7 101 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 MEIG1Q5JSS6 88 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 SPANXN3Q5MJ09 141 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 LCN12Q6JVE5 192 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 DNM1P46Q6ZS02 220 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 PRNTQ86SH4 94 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 SLC22A24Q8N4F4 322 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 ZDHHC22Q8N966 263 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 OR2M3Q8NG83 312 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 GEMIN6Q8WXD5 167 aaKnown RBP3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 GNPNAT1Q96EK6 184 aaPredicted RBP3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 BORCS8Q96FH0 119 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 TEX37Q96LM6 180 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 LINC00479Q96M42 142 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 LINC00052Q96N35 136 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 OR2A5Q96R48 311 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 GPX7Q96SL4 187 aaPredicted RBP3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 DERL1Q9BUN8 251 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 TMEM191AQ9H0A3 160 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 RERGLQ9H628 205 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 TAS2R8Q9NYW2 309 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 CACNG5Q9UF02 275 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 TRMT112Q9UI30 125 aaKnown RBP3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 RPL26L1Q9UNX3 145 aaKnown RBP3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 HEBP2Q9Y5Z4 205 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 MTCL1Q9Y4B5 1905 aaKnown RBP3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 SMCHD1A6NHR9 2005 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 RALGAPA1Q6GYQ0 2036 aa3.59□□□□□ -1.83
CCDC88A-210ENST00000468534 SPATA31E1Q6ZUB1 1445 aa3.59□□□□□ -1.84
CCDC88A-210ENST00000468534 TEX14Q8IWB6 1497 aa3.59□□□□□ -1.84
CCDC88A-210ENST00000468534 DNMT1P26358 1616 aaKnown RBP3.59□□□□□ -1.84
CCDC88A-210ENST00000468534 SMARCA4P51532 1647 aa3.59□□□□□ -1.84
CCDC88A-210ENST00000468534 XIRP1Q702N8 1843 aaKnown RBP3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 BRCA1P38398 1863 aaKnown RBP3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 MYH2Q9UKX2 1941 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 IGHV1OR15-1A0A075B7D0 117 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 NDUFAF8A1L188 74 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 RPL36A-HNRNPH2H7BZ11 118 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 GSTZ1O43708 216 aaPredicted RBP3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 IMPA1P29218 277 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 RBMXP38159 391 aaKnown RBP3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 BTG2P78543 158 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 DCDP81605 110 aaKnown RBP3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 HOXC5Q00444 222 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 PDGFRLQ15198 375 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 RTL8BQ17RB0 113 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 C17orf58Q2M2W7 97 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 FAM74A1Q5RGS3 127 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 SHISA6Q6ZSJ9 500 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 LINC00173Q6ZV60 143 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 WDR86Q86TI4 376 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 MKXQ8IYA7 352 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 RNF175Q8N4F7 328 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 YIPF7Q8N8F6 280 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 CNRIP1Q96F85 164 aaPredicted RBP3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 OPRPNQ99935 248 aaPredicted RBP3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 THTPAQ9BU02 230 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 ADAT1Q9BUB4 502 aaKnown RBP3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 MRPL20Q9BYC9 149 aaKnown RBP3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 ZNF702PQ9H963 129 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 FGF22Q9HCT0 170 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 OTORQ9NRC9 128 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 FBXL12Q9NXK8 326 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 TAAR3PQ9P1P4 343 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 PYGO1Q9Y3Y4 419 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 TRAPPC8Q9Y2L5 1435 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 REREQ9P2R6 1566 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 KIAA1551Q9HCM1 1747 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 AKAP12Q02952 1782 aa3.58□□□□□ -1.84
CCDC88A-210ENST00000468534 IGKV1-27A0A075B6S5 117 aa3.57□□□□□ -1.84
CCDC88A-210ENST00000468534 TRGV8A0A0C4DH27 118 aa3.57□□□□□ -1.84
CCDC88A-210ENST00000468534 C7orf71A4D174 169 aa3.57□□□□□ -1.84
CCDC88A-210ENST00000468534 MEIS3P1A6NDR6 274 aa3.57□□□□□ -1.84
CCDC88A-210ENST00000468534 CD300LBA8K4G0 201 aa3.57□□□□□ -1.84
CCDC88A-210ENST00000468534 BBIP1A8MTZ0 92 aa3.57□□□□□ -1.84
CCDC88A-210ENST00000468534 C4orf51C9J302 202 aa3.57□□□□□ -1.84
CCDC88A-210ENST00000468534 FNDC10F2Z333 226 aa3.57□□□□□ -1.84
CCDC88A-210ENST00000468534 M0R381 172 aa3.57□□□□□ -1.84
CCDC88A-210ENST00000468534 LYZL6O75951 148 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms