RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 LYSTQ99698 3801 aa5.52□□□□□ -1.53
USP54-208ENST00000461520 TRDV1A0A1B0GX56 115 aa5.52□□□□□ -1.53
USP54-208ENST00000461520 TRIM64CA6NLI5 447 aa5.52□□□□□ -1.53
USP54-208ENST00000461520 SRRM4A7MD48 611 aaKnown RBP5.52□□□□□ -1.53
USP54-208ENST00000461520 GNB3P16520 340 aa5.52□□□□□ -1.53
USP54-208ENST00000461520 RAB3BP20337 219 aa5.52□□□□□ -1.53
USP54-208ENST00000461520 MYL9P24844 172 aa5.52□□□□□ -1.53
USP54-208ENST00000461520 DUTP33316 252 aaKnown RBP5.52□□□□□ -1.53
USP54-208ENST00000461520 TALDO1P37837 337 aa5.52□□□□□ -1.53
USP54-208ENST00000461520 HSPA13P48723 471 aa5.52□□□□□ -1.53
USP54-208ENST00000461520 OR10A3P58181 314 aa5.52□□□□□ -1.53
USP54-208ENST00000461520 PJVKQ0ZLH3 352 aa5.52□□□□□ -1.53
USP54-208ENST00000461520 KLF5Q13887 457 aaPredicted RBP5.52□□□□□ -1.53
USP54-208ENST00000461520 SSX1Q16384 188 aa5.52□□□□□ -1.53
USP54-208ENST00000461520 VMA21Q3ZAQ7 101 aa5.52□□□□□ -1.53
USP54-208ENST00000461520 H1FOOQ8IZA3 346 aaPredicted RBP5.52□□□□□ -1.53
USP54-208ENST00000461520 TEX45Q8NA69 505 aa5.52□□□□□ -1.53
USP54-208ENST00000461520 MUC7Q8TAX7 377 aa5.52□□□□□ -1.53
USP54-208ENST00000461520 NUDCD2Q8WVJ2 157 aa5.52□□□□□ -1.53
USP54-208ENST00000461520 USMG5Q96IX5 58 aa5.52□□□□□ -1.53
USP54-208ENST00000461520 GINS4Q9BRT9 223 aa5.52□□□□□ -1.53
USP54-208ENST00000461520 NDUFB11Q9NX14 153 aa5.52□□□□□ -1.53
USP54-208ENST00000461520 PEF1Q9UBV8 284 aaKnown RBP5.52□□□□□ -1.53
USP54-208ENST00000461520 ZNF230Q9UIE0 474 aaPredicted RBP5.52□□□□□ -1.53
USP54-208ENST00000461520 STARD9Q9P2P6 4700 aa5.52□□□□□ -1.53
USP54-208ENST00000461520 A0A075B6Q4 140 aa5.51□□□□□ -1.53
USP54-208ENST00000461520 MSGN1A6NI15 193 aa5.51□□□□□ -1.53
USP54-208ENST00000461520 H0Y980 276 aa5.51□□□□□ -1.53
USP54-208ENST00000461520 CREBL2O60519 120 aaPredicted RBP5.51□□□□□ -1.53
USP54-208ENST00000461520 MRPS14O60783 128 aaKnown RBP5.51□□□□□ -1.53
USP54-208ENST00000461520 CTXN2P0C2S0 81 aa5.51□□□□□ -1.53
USP54-208ENST00000461520 IGHV4-30-4P0DP06 118 aa5.51□□□□□ -1.53
USP54-208ENST00000461520 DTYMKP23919 212 aa5.51□□□□□ -1.53
USP54-208ENST00000461520 RFX2P48378 723 aa5.51□□□□□ -1.53
USP54-208ENST00000461520 UBE2KP61086 200 aa5.51□□□□□ -1.53
USP54-208ENST00000461520 ARFRP1Q13795 201 aa5.51□□□□□ -1.53
USP54-208ENST00000461520 TATDN3Q17R31 274 aa5.51□□□□□ -1.53
USP54-208ENST00000461520 ZNF343Q6P1L6 599 aa5.51□□□□□ -1.53
USP54-208ENST00000461520 SGPP2Q8IWX5 399 aa5.51□□□□□ -1.53
USP54-208ENST00000461520 OR9G4Q8NGQ1 327 aa5.51□□□□□ -1.53
USP54-208ENST00000461520 MAFIPQ8WZ33 124 aa5.51□□□□□ -1.53
USP54-208ENST00000461520 C5orf30Q96GV9 206 aa5.51□□□□□ -1.53
USP54-208ENST00000461520 URB1-AS1Q96HZ7 61 aa5.51□□□□□ -1.53
USP54-208ENST00000461520 CNBD2Q96M20 576 aa5.51□□□□□ -1.53
USP54-208ENST00000461520 PHB2Q99623 299 aa5.51□□□□□ -1.53
USP54-208ENST00000461520 TM2D3Q9BRN9 247 aa5.51□□□□□ -1.53
USP54-208ENST00000461520 COA4Q9NYJ1 87 aa5.51□□□□□ -1.53
USP54-208ENST00000461520 SIGLEC8Q9NYZ4 499 aa5.51□□□□□ -1.53
USP54-208ENST00000461520 IGKV1D-8A0A087WSZ0 117 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 SCGNO76038 276 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 SLC22A5O76082 557 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 CRYZL1O95825 349 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 OR9G9P0C7N8 305 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 CD36P16671 472 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 SYNJ2BPP57105 145 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 FAM3BP58499 235 aaPredicted RBP5.5□□□□□ -1.53
USP54-208ENST00000461520 GABARAPL2P60520 117 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 TNXAQ16473 311 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 PRSS8Q16651 343 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 MRGPRG-AS1Q2M3A8 158 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 RPEL1Q2QD12 228 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 CDNFQ49AH0 187 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 C22orf42Q6IC83 251 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 IZUMO2Q6UXV1 221 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 IL34Q6ZMJ4 242 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 HAPLN4Q86UW8 402 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 ZNF645Q8N7E2 425 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 ADAD2Q8NCV1 583 aaKnown RBP5.5□□□□□ -1.53
USP54-208ENST00000461520 SRSF12Q8WXF0 261 aaKnown RBP5.5□□□□□ -1.53
USP54-208ENST00000461520 SNAPC3Q92966 411 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 ATG5Q9H1Y0 275 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 DCSTAMPQ9H295 470 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 RAB26Q9ULW5 256 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 OR2W1Q9Y3N9 320 aa5.5□□□□□ -1.53
USP54-208ENST00000461520 CSMD3Q7Z407 3707 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 TRBV9A0A0B4J1U6 114 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 A0A0B4J203 849 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 FAM223BA6NKX1 122 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 AIREO43918 545 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 ACTL6BO94805 426 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 OR2A4O95047 310 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 TRBV12-3P01733 135 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 HLA-DQB1P01920 261 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 CSN3P07498 182 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 SAA1P0DJI8 122 aaPredicted RBP5.49□□□□□ -1.53
USP54-208ENST00000461520 APELAP0DMC3 54 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 LYL1P12980 280 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 FGF9P31371 208 aaPredicted RBP5.49□□□□□ -1.53
USP54-208ENST00000461520 CDK10Q15131 360 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 UBE2UQ5VVX9 321 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 HACD4Q5VWC8 232 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 LCN12Q6JVE5 192 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 IDO2Q6ZQW0 420 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 KCTD9Q7L273 389 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 GTSCR1Q86UQ5 136 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 TPRA1Q86W33 373 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 NR2C2APQ86WQ0 139 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 FAM223AQ8IWN6 122 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 MMD2Q8IY49 270 aa5.49□□□□□ -1.53
USP54-208ENST00000461520 Q8N402 240 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms