RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 SIRT7Q9NRC8 400 aa11.15□□□□□ -0.63
CLK3-203ENST00000454830 MYO18BQ8IUG5 2567 aa11.14□□□□□ -0.63
CLK3-203ENST00000454830 SOX15O60248 233 aa11.14□□□□□ -0.63
CLK3-203ENST00000454830 IFNA1P01562 189 aa11.14□□□□□ -0.63
CLK3-203ENST00000454830 ARF6P62330 175 aa11.14□□□□□ -0.63
CLK3-203ENST00000454830 TMEM155Q4W5P6 130 aa11.14□□□□□ -0.63
CLK3-203ENST00000454830 ISOC2Q96AB3 205 aa11.14□□□□□ -0.63
CLK3-203ENST00000454830 PRORYQ9H606 182 aa11.14□□□□□ -0.63
CLK3-203ENST00000454830 CBLN4Q9NTU7 201 aa11.14□□□□□ -0.63
CLK3-203ENST00000454830 MLXQ9UH92 298 aa11.14□□□□□ -0.63
CLK3-203ENST00000454830 SLC25A17O43808 307 aa11.14□□□□□ -0.63
CLK3-203ENST00000454830 GNB2P62879 340 aa11.14□□□□□ -0.63
CLK3-203ENST00000454830 GCSAMLQ5JQS6 135 aa11.14□□□□□ -0.63
CLK3-203ENST00000454830 TET2Q6N021 2002 aaPredicted RBP11.14□□□□□ -0.63
CLK3-203ENST00000454830 DPPA3Q6W0C5 159 aa11.14□□□□□ -0.63
CLK3-203ENST00000454830 RPP25LQ8N5L8 163 aaKnown RBP11.14□□□□□ -0.63
CLK3-203ENST00000454830 FAM122AQ96E09 287 aa11.14□□□□□ -0.63
CLK3-203ENST00000454830 ACTR3CQ9C0K3 210 aaPredicted RBP11.14□□□□□ -0.63
CLK3-203ENST00000454830 UNKLQ9H9P5 680 aaKnown RBP11.14□□□□□ -0.63
CLK3-203ENST00000454830 GAB2Q9UQC2 676 aa11.14□□□□□ -0.63
CLK3-203ENST00000454830 TACC2O95359 2948 aa11.14□□□□□ -0.63
CLK3-203ENST00000454830 ZNF726P1Q15940 193 aa11.14□□□□□ -0.63
CLK3-203ENST00000454830 OR10W1Q8NGF6 305 aa11.14□□□□□ -0.63
CLK3-203ENST00000454830 TMEM133Q9H2Q1 129 aa11.14□□□□□ -0.63
CLK3-203ENST00000454830 A0A1W2PPH5 198 aa11.13□□□□□ -0.63
CLK3-203ENST00000454830 C7orf77A4D0Y5 90 aa11.13□□□□□ -0.63
CLK3-203ENST00000454830 IGKV1D-33P01593 117 aa11.13□□□□□ -0.63
CLK3-203ENST00000454830 IGKV1-33P01594 117 aa11.13□□□□□ -0.63
CLK3-203ENST00000454830 TMEM186Q96B77 213 aa11.13□□□□□ -0.63
CLK3-203ENST00000454830 FAM90A9PA6NNJ1 464 aa11.13□□□□□ -0.63
CLK3-203ENST00000454830 PMS2P5A8MQ11 134 aa11.13□□□□□ -0.63
CLK3-203ENST00000454830 H0YJW9 148 aa11.13□□□□□ -0.63
CLK3-203ENST00000454830 UPK2O00526 184 aa11.13□□□□□ -0.63
CLK3-203ENST00000454830 CYB5BO43169 146 aa11.13□□□□□ -0.63
CLK3-203ENST00000454830 GNB1P62873 340 aa11.13□□□□□ -0.63
CLK3-203ENST00000454830 ACOT6Q3I5F7 207 aaPredicted RBP11.13□□□□□ -0.63
CLK3-203ENST00000454830 C10orf55Q5SWW7 151 aa11.13□□□□□ -0.63
CLK3-203ENST00000454830 MIC13Q5XKP0 118 aa11.13□□□□□ -0.63
CLK3-203ENST00000454830 DHRS7BQ6IAN0 325 aaPredicted RBP11.13□□□□□ -0.63
CLK3-203ENST00000454830 OR10A7Q8NGE5 316 aa11.13□□□□□ -0.63
CLK3-203ENST00000454830 CLDND2Q8NHS1 167 aa11.13□□□□□ -0.63
CLK3-203ENST00000454830 KAAG1Q9UBP8 84 aa11.13□□□□□ -0.63
CLK3-203ENST00000454830 ARG1P05089 322 aa11.13□□□□□ -0.63
CLK3-203ENST00000454830 VDAC2P45880 294 aaPredicted RBP11.13□□□□□ -0.63
CLK3-203ENST00000454830 ICAM4Q14773 271 aa11.13□□□□□ -0.63
CLK3-203ENST00000454830 NAV3Q8IVL0 2385 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 hCG_1809904A0A1W2PP81 198 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 A0A1W2PPE2 198 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 A0A1W2PR64 198 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 A0A1W2PRV1 198 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 MBP02144 154 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 PRRX1P54821 245 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 UBE2G2P60604 165 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 RPL8P62917 257 aaKnown RBP11.12□□□□□ -0.63
CLK3-203ENST00000454830 PLGLAQ15195 96 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 ZNF429Q86V71 674 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 OR4C13Q8NGP0 309 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 RAB24Q969Q5 203 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 RPEQ96AT9 228 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 NEIL1Q96FI4 390 aaPredicted RBP11.12□□□□□ -0.63
CLK3-203ENST00000454830 NIPSNAP3BQ9BS92 247 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 LINC00574Q9H8X3 128 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 SMCO4Q9NRQ5 59 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 WASHC3Q9Y3C0 194 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 INSIG2Q9Y5U4 225 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 ITPR1Q14643 2758 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 NDUFS7O75251 213 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 CDC34P49427 236 aaPredicted RBP11.12□□□□□ -0.63
CLK3-203ENST00000454830 RAB31Q13636 194 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 ZNF833PQ6ZTB9 187 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 PNKDQ8N490 385 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 OR52E5Q8NH55 327 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 OSR1Q8TAX0 266 aaPredicted RBP11.12□□□□□ -0.63
CLK3-203ENST00000454830 TRBV23-1A0A0A0MS06 115 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 IGHV3-48P01763 117 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 BCL2P10415 239 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 C10orf91Q5T1B1 145 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 NABP2Q9BQ15 211 aa11.12□□□□□ -0.63
CLK3-203ENST00000454830 FOXA2Q9Y261 457 aaPredicted RBP11.12□□□□□ -0.63
CLK3-203ENST00000454830 SRP19P09132 144 aaKnown RBP11.11□□□□□ -0.63
CLK3-203ENST00000454830 TAGLN2P37802 199 aaKnown RBP11.11□□□□□ -0.63
CLK3-203ENST00000454830 CST9LP1Q5W188 147 aa11.11□□□□□ -0.63
CLK3-203ENST00000454830 WDR25Q64LD2 544 aaPredicted RBP11.11□□□□□ -0.63
CLK3-203ENST00000454830 RBMS3Q6XE24 437 aaKnown RBP11.11□□□□□ -0.63
CLK3-203ENST00000454830 TMEM14BQ9NUH8 114 aa11.11□□□□□ -0.63
CLK3-203ENST00000454830 CTXND1A0A1B0GTU2 59 aa11.11□□□□□ -0.63
CLK3-203ENST00000454830 TEX50A0A1B0GTY4 177 aa11.11□□□□□ -0.63
CLK3-203ENST00000454830 FAM157AC9JC47 383 aa11.11□□□□□ -0.63
CLK3-203ENST00000454830 H3BQ15 152 aa11.11□□□□□ -0.63
CLK3-203ENST00000454830 LY86O95711 162 aa11.11□□□□□ -0.63
CLK3-203ENST00000454830 PAX6P26367 422 aa11.11□□□□□ -0.63
CLK3-203ENST00000454830 PPOXP50336 477 aa11.11□□□□□ -0.63
CLK3-203ENST00000454830 ERHP84090 104 aaKnown RBP11.11□□□□□ -0.63
CLK3-203ENST00000454830 VMA21Q3ZAQ7 101 aa11.11□□□□□ -0.63
CLK3-203ENST00000454830 OR5T1Q8NG75 326 aa11.11□□□□□ -0.63
CLK3-203ENST00000454830 RPUSD4Q96CM3 377 aaKnown RBP11.11□□□□□ -0.63
CLK3-203ENST00000454830 ACY3Q96HD9 319 aa11.11□□□□□ -0.63
CLK3-203ENST00000454830 FKBP11Q9NYL4 201 aa11.11□□□□□ -0.63
CLK3-203ENST00000454830 IGHV2-26A0A0B4J1V2 119 aa11.11□□□□□ -0.63
CLK3-203ENST00000454830 REG1AP05451 166 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms