RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 Q6Q795 121 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 CROCCP2Q86T23 111 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 SGMS2Q8NHU3 365 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 SLC25A40Q8TBP6 338 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 ZNF721Q8TF20 911 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 TOMM6Q96B49 74 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 RMND5BQ96G75 393 aaPredicted RBP3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 SPIN2AQ99865 258 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 SPIN2BQ9BPZ2 258 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 OR2D2Q9H210 308 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 LRTM1Q9HBL6 345 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 ZNF230Q9UIE0 474 aaPredicted RBP3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 TSPOAP1O95153 1857 aa3.17□□□□□ -1.9
CCDC88A-206ENST00000430086 NAV1Q8NEY1 1877 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 TMEM150BA6NC51 233 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 A6NED7 52 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 C9JCJ5 164 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 BANF1O75531 89 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 GADD45GO95257 159 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 FAM107AO95990 144 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 IL4P05112 153 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 RPS4Y1P22090 263 aaKnown RBP3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 CRABP2P29373 138 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 TGFBR1P36897 503 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 CDC42P60953 191 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 RBX1P62877 108 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 MOBPQ13875 183 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 CLVS1Q8IUQ0 354 aaPredicted RBP3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 ZFP62Q8NB50 900 aaPredicted RBP3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 OR9Q1Q8NGQ5 310 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 PLEKHB2Q96CS7 222 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 C2orf50Q96LR7 162 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 IP6K3Q96PC2 410 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 HSPB9Q9BQS6 159 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 IMUPQ9GZP8 106 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 C11orf68Q9H3H3 251 aaKnown RBP3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 MED11Q9P086 117 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 SNX12Q9UMY4 172 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 SETD5Q9C0A6 1442 aa3.16□□□□□ -1.9
CCDC88A-206ENST00000430086 ITGB4P16144 1822 aa3.15□□□□□ -1.91
CCDC88A-206ENST00000430086 TRBV24-1A0A075B6N3 115 aa3.15□□□□□ -1.91
CCDC88A-206ENST00000430086 BET1O15155 118 aa3.15□□□□□ -1.91
CCDC88A-206ENST00000430086 PLA2G10O15496 165 aa3.15□□□□□ -1.91
CCDC88A-206ENST00000430086 CCNKO75909 580 aa3.15□□□□□ -1.91
CCDC88A-206ENST00000430086 LHBP01229 141 aa3.15□□□□□ -1.91
CCDC88A-206ENST00000430086 TFPTP0C1Z6 253 aa3.15□□□□□ -1.91
CCDC88A-206ENST00000430086 CISD3P0C7P0 127 aa3.15□□□□□ -1.91
CCDC88A-206ENST00000430086 PSMD8P48556 350 aa3.15□□□□□ -1.91
CCDC88A-206ENST00000430086 UNQ9165/PRO28630Q6UXU0 137 aa3.15□□□□□ -1.91
CCDC88A-206ENST00000430086 GPHB5Q86YW7 130 aa3.15□□□□□ -1.91
CCDC88A-206ENST00000430086 SPANXA2-OT1Q8N9U9 137 aa3.15□□□□□ -1.91
CCDC88A-206ENST00000430086 OR5J2Q8NH18 312 aa3.15□□□□□ -1.91
CCDC88A-206ENST00000430086 DEDD2Q8WXF8 326 aa3.15□□□□□ -1.91
CCDC88A-206ENST00000430086 RNF5Q99942 180 aa3.15□□□□□ -1.91
CCDC88A-206ENST00000430086 MND1Q9BWT6 205 aa3.15□□□□□ -1.91
CCDC88A-206ENST00000430086 ZNF586Q9NXT0 402 aa3.15□□□□□ -1.91
CCDC88A-206ENST00000430086 TNS2Q63HR2 1409 aa3.15□□□□□ -1.91
CCDC88A-206ENST00000430086 TRAV4A0A0B4J268 109 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 TMEM269A0A1B0GVZ9 245 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 I3L521 148 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 SLC25A20O43772 301 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 SH2D1AO60880 128 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 LINC00869P0C866 280 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 NPPCP23582 126 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 BLVRBP30043 206 aaPredicted RBP3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 S100A7P31151 101 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 RPL27AP46776 148 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 ATP5G3P48201 142 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 TAS2R20P59543 309 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 DHRS2Q13268 280 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 OR8G1Q15617 311 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 DEFB115Q30KQ5 88 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 MRPL51Q4U2R6 128 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 ZFAND6Q6FIF0 208 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 RPL22L1Q6P5R6 122 aaKnown RBP3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 LYZL2Q7Z4W2 148 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 C3orf22Q8N5N4 141 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 ZNF283Q8N7M2 679 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 DAND5Q8N907 189 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 OR13C4Q8NGS5 318 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 LMX1AQ8TE12 382 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 IGF2BP2-AS1Q96M15 143 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 ERMAPQ96PL5 475 aaPredicted RBP3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 MGLLQ99685 303 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 EFCAB1Q9HAE3 211 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 CYSLTR1Q9Y271 337 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 ICOSQ9Y6W8 199 aa3.14□□□□□ -1.91
CCDC88A-206ENST00000430086 NID2Q14112 1375 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 CEP170Q5SW79 1584 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 BAZ2AQ9UIF9 1905 aaKnown RBP3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 FMN1Q68DA7 1419 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 UHRF1BP1Q6BDS2 1440 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 NCOA3Q9Y6Q9 1424 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 YLPM1P49750 1951 aaKnown RBP3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 CLDN25C9JDP6 229 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 NDUFB2O95178 105 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 IGKV1D-33P01593 117 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 IGKV1-33P01594 117 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 IGLV7-43P04211 117 aa3.13□□□□□ -1.91
CCDC88A-206ENST00000430086 HIST1H2BOP23527 126 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms