RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 KRTAP10-9P60411 292 aa7.69□□□□□ -1.18
HMGB4-201ENST00000425537 RPL8P62917 257 aaKnown RBP7.69□□□□□ -1.18
HMGB4-201ENST00000425537 DLK1P80370 383 aa7.69□□□□□ -1.18
HMGB4-201ENST00000425537 PRCDQ00LT1 54 aa7.69□□□□□ -1.18
HMGB4-201ENST00000425537 PEA15Q15121 130 aa7.69□□□□□ -1.18
HMGB4-201ENST00000425537 CCDC144NLQ6NUI1 221 aa7.69□□□□□ -1.18
HMGB4-201ENST00000425537 C11orf42Q8N5U0 333 aa7.69□□□□□ -1.18
HMGB4-201ENST00000425537 TEX45Q8NA69 505 aa7.69□□□□□ -1.18
HMGB4-201ENST00000425537 OR11H6Q8NGC7 330 aa7.69□□□□□ -1.18
HMGB4-201ENST00000425537 LYPD6BQ8NI32 183 aa7.69□□□□□ -1.18
HMGB4-201ENST00000425537 TMEM167AQ8TBQ9 72 aa7.69□□□□□ -1.18
HMGB4-201ENST00000425537 TAF15Q92804 592 aaKnown RBP eCLIP7.69□□□□□ -1.18
HMGB4-201ENST00000425537 NARS2Q96I59 477 aaKnown RBP7.69□□□□□ -1.18
HMGB4-201ENST00000425537 OR4C12Q96R67 309 aa7.69□□□□□ -1.18
HMGB4-201ENST00000425537 CCL19Q99731 98 aa7.69□□□□□ -1.18
HMGB4-201ENST00000425537 WDR61Q9GZS3 305 aaKnown RBP7.69□□□□□ -1.18
HMGB4-201ENST00000425537 SMDT1Q9H4I9 107 aa7.69□□□□□ -1.18
HMGB4-201ENST00000425537 SPTBN1Q01082 2364 aaKnown RBP7.68□□□□□ -1.18
HMGB4-201ENST00000425537 FOXH1O75593 365 aa7.68□□□□□ -1.18
HMGB4-201ENST00000425537 LY6HO94772 140 aa7.68□□□□□ -1.18
HMGB4-201ENST00000425537 IGHV2-5P01817 119 aa7.68□□□□□ -1.18
HMGB4-201ENST00000425537 IFNA4P05014 189 aa7.68□□□□□ -1.18
HMGB4-201ENST00000425537 H2AFB1P0C5Y9 115 aa7.68□□□□□ -1.18
HMGB4-201ENST00000425537 SAA1P0DJI8 122 aaPredicted RBP7.68□□□□□ -1.18
HMGB4-201ENST00000425537 NPY1RP25929 384 aa7.68□□□□□ -1.18
HMGB4-201ENST00000425537 SNCAP37840 140 aa7.68□□□□□ -1.18
HMGB4-201ENST00000425537 DVL1P1P54792 670 aaPredicted RBP7.68□□□□□ -1.18
HMGB4-201ENST00000425537 ERHP84090 104 aaKnown RBP7.68□□□□□ -1.18
HMGB4-201ENST00000425537 RAB31Q13636 194 aa7.68□□□□□ -1.18
HMGB4-201ENST00000425537 VWC2Q2TAL6 325 aa7.68□□□□□ -1.18
HMGB4-201ENST00000425537 UTF1Q5T230 341 aa7.68□□□□□ -1.18
HMGB4-201ENST00000425537 ETV3LQ6ZN32 361 aa7.68□□□□□ -1.18
HMGB4-201ENST00000425537 C1orf229Q6ZS94 237 aaPredicted RBP7.68□□□□□ -1.18
HMGB4-201ENST00000425537 MOB3BQ86TA1 216 aa7.68□□□□□ -1.18
HMGB4-201ENST00000425537 MMD2Q8IY49 270 aa7.68□□□□□ -1.18
HMGB4-201ENST00000425537 VKORC1L1Q8N0U8 176 aa7.68□□□□□ -1.18
HMGB4-201ENST00000425537 PNKDQ8N490 385 aa7.68□□□□□ -1.18
HMGB4-201ENST00000425537 SLC24A4Q8NFF2 622 aa7.68□□□□□ -1.18
HMGB4-201ENST00000425537 ZDHHC16Q969W1 377 aa7.68□□□□□ -1.18
HMGB4-201ENST00000425537 RBMXL1Q96E39 390 aaKnown RBP7.68□□□□□ -1.18
HMGB4-201ENST00000425537 PIMREGQ9BSJ6 248 aa7.68□□□□□ -1.18
HMGB4-201ENST00000425537 SH3BGRL3Q9H299 93 aa7.68□□□□□ -1.18
HMGB4-201ENST00000425537 UNKLQ9H9P5 680 aaKnown RBP7.68□□□□□ -1.18
HMGB4-201ENST00000425537 TREM1Q9NP99 234 aa7.68□□□□□ -1.18
HMGB4-201ENST00000425537 DPM3Q9P2X0 92 aa7.68□□□□□ -1.18
HMGB4-201ENST00000425537 DOCK11Q5JSL3 2073 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 HECTD1Q9ULT8 2610 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 TRAV1-1A0A0B4J248 108 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 IGHV1-3A0A0C4DH29 117 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 UBE2L5PA0A1B0GUS4 154 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 A0A1W2PPR1 153 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 C15orf62A8K5M9 175 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 C22orf46C9J442 243 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 INS-IGF2F8WCM5 200 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 ACTL6BO94805 426 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 IGKV1-16P04430 117 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 FGF7P21781 194 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 COX7A1P24310 79 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 CD1BP29016 333 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 REG1BP48304 166 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 LGALS4P56470 323 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 DSCR9P59020 149 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 TMEM41BQ5BJD5 291 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 MINOS1Q5TGZ0 78 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 CENPVQ7Z7K6 275 aaPredicted RBP7.67□□□□□ -1.18
HMGB4-201ENST00000425537 HAPLN4Q86UW8 402 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 HINT2Q9BX68 163 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 MINOS1-NBL1R4GNA1 71 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 USP9YO00507 2555 aaPredicted RBP7.67□□□□□ -1.18
HMGB4-201ENST00000425537 COL12A1Q99715 3063 aa7.67□□□□□ -1.18
HMGB4-201ENST00000425537 SPTAN1Q13813 2472 aaKnown RBP7.67□□□□□ -1.18
HMGB4-201ENST00000425537 PTPN13Q12923 2485 aa7.66□□□□□ -1.18
HMGB4-201ENST00000425537 TRAV3A0A0B4J244 114 aa7.66□□□□□ -1.18
HMGB4-201ENST00000425537 TEX50A0A1B0GTY4 177 aa7.66□□□□□ -1.18
HMGB4-201ENST00000425537 A0A1B0GW64 132 aa7.66□□□□□ -1.18
HMGB4-201ENST00000425537 TMEM218A2RU14 115 aa7.66□□□□□ -1.18
HMGB4-201ENST00000425537 PMS2P5A8MQ11 134 aa7.66□□□□□ -1.18
HMGB4-201ENST00000425537 IFNA1P01562 189 aa7.66□□□□□ -1.18
HMGB4-201ENST00000425537 TAGLN2P37802 199 aaKnown RBP7.66□□□□□ -1.18
HMGB4-201ENST00000425537 COMPP49747 757 aaPredicted RBP7.66□□□□□ -1.18
HMGB4-201ENST00000425537 ARF6P62330 175 aa7.66□□□□□ -1.18
HMGB4-201ENST00000425537 ARL16Q0P5N6 197 aa7.66□□□□□ -1.18
HMGB4-201ENST00000425537 ACOT6Q3I5F7 207 aaPredicted RBP7.66□□□□□ -1.18
HMGB4-201ENST00000425537 C2orf83Q53S99 150 aa7.66□□□□□ -1.18
HMGB4-201ENST00000425537 SPINK9Q5DT21 86 aa7.66□□□□□ -1.18
HMGB4-201ENST00000425537 TPTE2P1Q5T6R2 138 aa7.66□□□□□ -1.18
HMGB4-201ENST00000425537 CLEC2AQ6UVW9 174 aa7.66□□□□□ -1.18
HMGB4-201ENST00000425537 BPIFCQ8NFQ6 507 aa7.66□□□□□ -1.18
HMGB4-201ENST00000425537 OR4P4Q8NGL7 312 aa7.66□□□□□ -1.18
HMGB4-201ENST00000425537 FAM168AQ92567 244 aa7.66□□□□□ -1.18
HMGB4-201ENST00000425537 NARFLQ9H6Q4 476 aa7.66□□□□□ -1.18
HMGB4-201ENST00000425537 NPVFQ9HCQ7 196 aa7.66□□□□□ -1.18
HMGB4-201ENST00000425537 ZNRD1Q9P1U0 126 aa7.66□□□□□ -1.18
HMGB4-201ENST00000425537 ABCA4P78363 2273 aa7.66□□□□□ -1.18
HMGB4-201ENST00000425537 IGHV2-70DA0A0C4DH43 119 aa7.65□□□□□ -1.18
HMGB4-201ENST00000425537 SMCO3A2RU48 225 aa7.65□□□□□ -1.18
HMGB4-201ENST00000425537 RNASEK-C17orf49H0YIS7 233 aa7.65□□□□□ -1.18
HMGB4-201ENST00000425537 LY6LH3BQJ8 138 aa7.65□□□□□ -1.18
HMGB4-201ENST00000425537 CYB5BO43169 146 aa7.65□□□□□ -1.18
HMGB4-201ENST00000425537 RUNX1Q01196 453 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms