RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 IGLV2-23P01705 113 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 IGKV1D-39P04432 117 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 TRAPPC2P0DI81 140 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 TRAPPC2BP0DI82 140 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 NKX2-1P43699 371 aaPredicted RBP8.05□□□□□ -1.12
CD44-207ENST00000425428 HOXA1P49639 335 aaPredicted RBP8.05□□□□□ -1.12
CD44-207ENST00000425428 SPCS3P61009 180 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 UBA52P62987 128 aaKnown RBP8.05□□□□□ -1.12
CD44-207ENST00000425428 ERHP84090 104 aaKnown RBP8.05□□□□□ -1.12
CD44-207ENST00000425428 NMSQ5H8A3 153 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 ZNF429Q86V71 674 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 FAM71E2Q8N5Q1 922 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 OR5M8Q8NGP6 311 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 ARPC1AQ92747 370 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 RITA1Q96K30 269 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 TMEM68Q96MH6 324 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 CIB3Q96Q77 187 aaPredicted RBP8.05□□□□□ -1.12
CD44-207ENST00000425428 FYTTD1Q96QD9 318 aaKnown RBP8.05□□□□□ -1.12
CD44-207ENST00000425428 FOXA2Q9Y261 457 aaPredicted RBP8.05□□□□□ -1.12
CD44-207ENST00000425428 hCG_2014768A0A024R1R8 64 aa8.04□□□□□ -1.12
CD44-207ENST00000425428 L7N2F9 121 aa8.04□□□□□ -1.12
CD44-207ENST00000425428 TSPAN9O75954 239 aa8.04□□□□□ -1.12
CD44-207ENST00000425428 SUB1P53999 127 aaKnown RBP eCLIP8.04□□□□□ -1.12
CD44-207ENST00000425428 OR2B8PP59922 312 aa8.04□□□□□ -1.12
CD44-207ENST00000425428 HSPE1P61604 102 aaKnown RBP8.04□□□□□ -1.12
CD44-207ENST00000425428 VAMP2P63027 116 aa8.04□□□□□ -1.12
CD44-207ENST00000425428 SLC35B1P78383 322 aa8.04□□□□□ -1.12
CD44-207ENST00000425428 FGL1Q08830 312 aa8.04□□□□□ -1.12
CD44-207ENST00000425428 NOXA1Q86UR1 476 aa8.04□□□□□ -1.12
CD44-207ENST00000425428 OR52E5Q8NH55 327 aa8.04□□□□□ -1.12
CD44-207ENST00000425428 GRPEL2Q8TAA5 225 aa8.04□□□□□ -1.12
CD44-207ENST00000425428 SRSF8Q9BRL6 282 aaKnown RBP8.04□□□□□ -1.12
CD44-207ENST00000425428 QTRT1Q9BXR0 403 aaKnown RBP8.04□□□□□ -1.12
CD44-207ENST00000425428 NMES1Q9C002 83 aa8.04□□□□□ -1.12
CD44-207ENST00000425428 PARP11Q9NR21 331 aa8.04□□□□□ -1.12
CD44-207ENST00000425428 NSG2Q9Y328 171 aa8.04□□□□□ -1.12
CD44-207ENST00000425428 FAM181BA6NEQ2 426 aa8.03□□□□□ -1.12
CD44-207ENST00000425428 AP4M1O00189 453 aa8.03□□□□□ -1.12
CD44-207ENST00000425428 CCSO14618 274 aa8.03□□□□□ -1.12
CD44-207ENST00000425428 ST8SIA3O43173 380 aa8.03□□□□□ -1.12
CD44-207ENST00000425428 OR9G9P0C7N8 305 aa8.03□□□□□ -1.12
CD44-207ENST00000425428 SNCAP37840 140 aa8.03□□□□□ -1.12
CD44-207ENST00000425428 VDAC2P45880 294 aaPredicted RBP8.03□□□□□ -1.12
CD44-207ENST00000425428 COMPP49747 757 aaPredicted RBP8.03□□□□□ -1.12
CD44-207ENST00000425428 S100A10P60903 97 aa8.03□□□□□ -1.12
CD44-207ENST00000425428 RELBQ01201 579 aa8.03□□□□□ -1.12
CD44-207ENST00000425428 ZBTB8BQ8NAP8 495 aaPredicted RBP8.03□□□□□ -1.12
CD44-207ENST00000425428 HEYLQ9NQ87 328 aaPredicted RBP8.03□□□□□ -1.12
CD44-207ENST00000425428 PLSCR3Q9NRY6 295 aa8.03□□□□□ -1.12
CD44-207ENST00000425428 TMEM14BQ9NUH8 114 aa8.03□□□□□ -1.12
CD44-207ENST00000425428 TNCP24821 2201 aa8.03□□□□□ -1.12
CD44-207ENST00000425428 HMX3A6NHT5 357 aa8.02□□□□□ -1.13
CD44-207ENST00000425428 OPN1MWP04001 364 aa8.02□□□□□ -1.13
CD44-207ENST00000425428 CRYGBP07316 175 aa8.02□□□□□ -1.13
CD44-207ENST00000425428 OPN1MW2P0DN77 364 aa8.02□□□□□ -1.13
CD44-207ENST00000425428 OPN1MW3P0DN78 364 aa8.02□□□□□ -1.13
CD44-207ENST00000425428 DEFA4P12838 97 aa8.02□□□□□ -1.13
CD44-207ENST00000425428 NUP62P37198 522 aaPredicted RBP8.02□□□□□ -1.13
CD44-207ENST00000425428 CX3CL1P78423 397 aa8.02□□□□□ -1.13
CD44-207ENST00000425428 TUSC1Q2TAM9 212 aa8.02□□□□□ -1.13
CD44-207ENST00000425428 OR1L6Q8NGR2 347 aa8.02□□□□□ -1.13
CD44-207ENST00000425428 OR4F5Q8NH21 305 aa8.02□□□□□ -1.13
CD44-207ENST00000425428 SRSF12Q8WXF0 261 aaKnown RBP8.02□□□□□ -1.13
CD44-207ENST00000425428 ZNF436Q9C0F3 470 aaPredicted RBP8.02□□□□□ -1.13
CD44-207ENST00000425428 NSD1Q96L73 2696 aaPredicted RBP8.02□□□□□ -1.13
CD44-207ENST00000425428 A0A0B4J293 547 aa8.02□□□□□ -1.13
CD44-207ENST00000425428 TEX50A0A1B0GTY4 177 aa8.02□□□□□ -1.13
CD44-207ENST00000425428 MSGN1A6NI15 193 aa8.02□□□□□ -1.13
CD44-207ENST00000425428 CHST1O43916 411 aa8.02□□□□□ -1.13
CD44-207ENST00000425428 IGHG2P01859 326 aa8.02□□□□□ -1.13
CD44-207ENST00000425428 RAP2BP61225 183 aa8.02□□□□□ -1.13
CD44-207ENST00000425428 RPL23AP62750 156 aaKnown RBP8.02□□□□□ -1.13
CD44-207ENST00000425428 TNFRSF9Q07011 255 aa8.02□□□□□ -1.13
CD44-207ENST00000425428 FCN2Q15485 313 aa8.02□□□□□ -1.13
CD44-207ENST00000425428 UNQ5815/PRO19632Q6UWF5 114 aa8.02□□□□□ -1.13
CD44-207ENST00000425428 THAP6Q8TBB0 222 aa8.02□□□□□ -1.13
CD44-207ENST00000425428 TPSG1Q9NRR2 321 aa8.02□□□□□ -1.13
CD44-207ENST00000425428 LSM5Q9Y4Y9 91 aaKnown RBP8.02□□□□□ -1.13
CD44-207ENST00000425428 PLXNB1O43157 2135 aa8.01□□□□□ -1.13
CD44-207ENST00000425428 TRAV3A0A0B4J244 114 aa8.01□□□□□ -1.13
CD44-207ENST00000425428 A0A1B0GUS0 222 aa8.01□□□□□ -1.13
CD44-207ENST00000425428 SYNGR2O43760 224 aa8.01□□□□□ -1.13
CD44-207ENST00000425428 SCAF4O95104 1147 aaKnown RBP8.01□□□□□ -1.13
CD44-207ENST00000425428 NXPH3O95157 252 aa8.01□□□□□ -1.13
CD44-207ENST00000425428 SIX6O95475 246 aa8.01□□□□□ -1.13
CD44-207ENST00000425428 IL6RP08887 468 aaPredicted RBP8.01□□□□□ -1.13
CD44-207ENST00000425428 GIPP09681 153 aaPredicted RBP8.01□□□□□ -1.13
CD44-207ENST00000425428 P0C879 139 aa8.01□□□□□ -1.13
CD44-207ENST00000425428 RAB11AP62491 216 aa8.01□□□□□ -1.13
CD44-207ENST00000425428 BLCAPP62952 87 aa8.01□□□□□ -1.13
CD44-207ENST00000425428 PRCDQ00LT1 54 aa8.01□□□□□ -1.13
CD44-207ENST00000425428 PJVKQ0ZLH3 352 aa8.01□□□□□ -1.13
CD44-207ENST00000425428 ECSCRQ19T08 205 aa8.01□□□□□ -1.13
CD44-207ENST00000425428 IZUMO4Q1ZYL8 232 aa8.01□□□□□ -1.13
CD44-207ENST00000425428 AKAP14Q86UN6 197 aa8.01□□□□□ -1.13
CD44-207ENST00000425428 SGMS2Q8NHU3 365 aa8.01□□□□□ -1.13
CD44-207ENST00000425428 DTD1Q8TEA8 209 aa8.01□□□□□ -1.13
CD44-207ENST00000425428 OR10C1Q96KK4 312 aa8.01□□□□□ -1.13
CD44-207ENST00000425428 RAB40CQ96S21 281 aa8.01□□□□□ -1.13
CD44-207ENST00000425428 ESM1Q9NQ30 184 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms