RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 A0A1B0GU03 582 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 A0A1W2PPE3 182 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 M0QZK8 103 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 HSD17B6O14756 317 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 FABP7O15540 132 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 ST8SIA3O43173 380 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 OR2F2O95006 317 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 IGHV3-7P01780 117 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 FCGR3AP08637 254 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 SCTP09683 121 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 CEACAM6P40199 344 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 CBX5P45973 191 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 RORCP51449 518 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 TMBIM6P55061 237 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 GNG2P59768 71 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 VBP1P61758 197 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 NCS1P62166 190 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 GPR107Q5VW38 600 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 HACD4Q5VWC8 232 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 BTNL8Q6UX41 500 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 CCBE1Q6UXH8 406 aaPredicted RBP1.95□□□□□ -2.1
VPS13A-208ENST00000423463 MOB3BQ86TA1 216 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 TGIF2LXQ8IUE1 241 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 Q8N2B8 174 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 DRAM1Q8N682 238 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 UXS1Q8NBZ7 420 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 OR8H1Q8NGG4 311 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 OR2T10Q8NGZ9 312 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 LINC01006Q8NI28 216 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 IL1F10Q8WWZ1 152 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 SLC25A46Q96AG3 418 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 SLC25A38Q96DW6 304 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 CYYR1Q96J86 154 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 RBM14Q96PK6 669 aaKnown RBP1.95□□□□□ -2.1
VPS13A-208ENST00000423463 HDHD3Q9BSH5 251 aaPredicted RBP1.95□□□□□ -2.1
VPS13A-208ENST00000423463 AUNIPQ9H7T9 357 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 PIPOXQ9P0Z9 390 aa1.95□□□□□ -2.1
VPS13A-208ENST00000423463 TRBV6-7A0A0A0MS04 114 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 IGKV1-6A0A0C4DH72 117 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 SMIM31A0A1B0GVY4 71 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 RAB29O14966 203 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 SLC31A2O15432 143 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 FGF16O43320 207 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 CDK2AP2O75956 126 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 APOA1P02647 267 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 GSTT2P0CG29 244 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 GSTT2BP0CG30 244 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 MDKP21741 143 aaPredicted RBP1.94□□□□□ -2.1
VPS13A-208ENST00000423463 PAX6P26367 422 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 PPP1CCP36873 323 aaKnown RBP1.94□□□□□ -2.1
VPS13A-208ENST00000423463 TGFBR1P36897 503 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 DIAPH2-AS1Q14236 149 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 GNMTQ14749 295 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 FCN2Q15485 313 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 ZNF674Q2M3X9 581 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 UBE2NLQ5JXB2 153 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 FAM71F2Q6NXP2 309 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 CNIH2Q6PI25 160 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 C5orf24Q7Z6I8 188 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 LYG1Q8N1E2 194 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 SAMD12Q8N8I0 201 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.94□□□□□ -2.1
VPS13A-208ENST00000423463 OR10J5Q8NHC4 309 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 OR2T6Q8NHC8 308 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 SGMS2Q8NHU3 365 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 RAB2BQ8WUD1 216 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 RTN4IP1Q8WWV3 396 aaPredicted RBP1.94□□□□□ -2.1
VPS13A-208ENST00000423463 AP3S1Q92572 193 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 BSCL2Q96G97 398 aaPredicted RBP1.94□□□□□ -2.1
VPS13A-208ENST00000423463 S1PR3Q99500 378 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 RNF5Q99942 180 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 CABLES2Q9BTV7 478 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 ST6GALNAC5Q9BVH7 336 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 NAA50Q9GZZ1 169 aaKnown RBP1.94□□□□□ -2.1
VPS13A-208ENST00000423463 ZNF221Q9UK13 617 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 CSMD1Q96PZ7 3565 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 NIPBLQ6KC79 2804 aaeCLIP1.94□□□□□ -2.1
VPS13A-208ENST00000423463 KIAA2026Q5HYC2 2103 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 IGKV1D-8A0A087WSZ0 117 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 TMEM235A6NFC5 223 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 CHST1O43916 411 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 SSX5O60225 188 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 NOL3O60936 208 aaKnown RBP1.94□□□□□ -2.1
VPS13A-208ENST00000423463 RBBP9O75884 186 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 SLC22A5O76082 557 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 MOSP00540 346 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 IGKV1D-33P01593 117 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 IGKV1-33P01594 117 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 CD24P25063 80 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 SOX6P35712 828 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 REG1BP48304 166 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 BLCAPP62952 87 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 HES1Q14469 280 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 KRTAP5-11Q6L8G4 156 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 ZNF833PQ6ZTB9 187 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 HOGA1Q86XE5 327 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 CLVS1Q8IUQ0 354 aaPredicted RBP1.94□□□□□ -2.1
VPS13A-208ENST00000423463 H1FOOQ8IZA3 346 aaPredicted RBP1.94□□□□□ -2.1
VPS13A-208ENST00000423463 Q8N6K4 173 aa1.94□□□□□ -2.1
VPS13A-208ENST00000423463 OR56B4Q8NH76 319 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms