RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 KIR2DS2P43631 304 aa13.01□□□□□ -0.33
SHH-201ENST00000297261 C5orf17Q8NAS9 161 aa13.01□□□□□ -0.33
SHH-201ENST00000297261 PAXXQ9BUH6 204 aa13.01□□□□□ -0.33
SHH-201ENST00000297261 TMEM56-RWDD3S4R434 201 aa13.01□□□□□ -0.33
SHH-201ENST00000297261 MAS1LP35410 378 aa13□□□□□ -0.33
SHH-201ENST00000297261 KCNMB1Q16558 191 aa13□□□□□ -0.33
SHH-201ENST00000297261 OR4D5Q8NGN0 318 aa13□□□□□ -0.33
SHH-201ENST00000297261 TMEM171Q8WVE6 324 aa13□□□□□ -0.33
SHH-201ENST00000297261 MRPL13Q9BYD1 178 aaKnown RBP13□□□□□ -0.33
SHH-201ENST00000297261 WISP1O95388 367 aa13□□□□□ -0.33
SHH-201ENST00000297261 TMEM256Q8N2U0 113 aa13□□□□□ -0.33
SHH-201ENST00000297261 ZNF645Q8N7E2 425 aa13□□□□□ -0.33
SHH-201ENST00000297261 ADTRPQ96IZ2 230 aa13□□□□□ -0.33
SHH-201ENST00000297261 ALKBH7Q9BT30 221 aaPredicted RBP13□□□□□ -0.33
SHH-201ENST00000297261 NRN1Q9NPD7 142 aa13□□□□□ -0.33
SHH-201ENST00000297261 SNAI2O43623 268 aa13□□□□□ -0.33
SHH-201ENST00000297261 RANBP2P49792 3224 aaKnown RBP13□□□□□ -0.33
SHH-201ENST00000297261 DENND4AQ7Z401 1863 aa13□□□□□ -0.33
SHH-201ENST00000297261 CLDN14O95500 239 aa13□□□□□ -0.33
SHH-201ENST00000297261 GCHFRP30047 84 aa13□□□□□ -0.33
SHH-201ENST00000297261 ADMP35318 185 aa13□□□□□ -0.33
SHH-201ENST00000297261 TMEM97Q5BJF2 176 aa13□□□□□ -0.33
SHH-201ENST00000297261 TMEM45BQ96B21 275 aa13□□□□□ -0.33
SHH-201ENST00000297261 DEPPQ9NTK1 212 aa13□□□□□ -0.33
SHH-201ENST00000297261 PRNDQ9UKY0 176 aa13□□□□□ -0.33
SHH-201ENST00000297261 AGFG2O95081 481 aa12.99□□□□□ -0.33
SHH-201ENST00000297261 LGALS4P56470 323 aa12.99□□□□□ -0.33
SHH-201ENST00000297261 LYZL4Q96KX0 146 aa12.99□□□□□ -0.33
SHH-201ENST00000297261 HARBI1Q96MB7 349 aa12.99□□□□□ -0.33
SHH-201ENST00000297261 PLSCR2Q9NRY7 297 aa12.99□□□□□ -0.33
SHH-201ENST00000297261 WDR87Q6ZQQ6 2873 aa12.99□□□□□ -0.33
SHH-201ENST00000297261 ACACAQ13085 2346 aa12.99□□□□□ -0.33
SHH-201ENST00000297261 IGHV3OR15-7A0A075B7D8 119 aa12.99□□□□□ -0.33
SHH-201ENST00000297261 A0A1W2PN81 502 aa12.99□□□□□ -0.33
SHH-201ENST00000297261 LINC00869P0C866 280 aa12.99□□□□□ -0.33
SHH-201ENST00000297261 WFDC8Q8IUA0 241 aa12.99□□□□□ -0.33
SHH-201ENST00000297261 ZNF703Q9H7S9 590 aaPredicted RBP12.99□□□□□ -0.33
SHH-201ENST00000297261 CDX4O14627 284 aaPredicted RBP12.99□□□□□ -0.33
SHH-201ENST00000297261 AMY1AP04745 511 aa12.99□□□□□ -0.33
SHH-201ENST00000297261 RIGQ13278 110 aa12.99□□□□□ -0.33
SHH-201ENST00000297261 C10orf128Q5T292 105 aa12.99□□□□□ -0.33
SHH-201ENST00000297261 IL36BQ9NZH7 164 aa12.99□□□□□ -0.33
SHH-201ENST00000297261 CRYABP02511 175 aaKnown RBP12.98□□□□□ -0.33
SHH-201ENST00000297261 SSTR5P35346 364 aa12.98□□□□□ -0.33
SHH-201ENST00000297261 BEND2Q8NDZ0 799 aa12.98□□□□□ -0.33
SHH-201ENST00000297261 OR51B2Q9Y5P1 312 aa12.98□□□□□ -0.33
SHH-201ENST00000297261 IGHV2-5P01817 119 aa12.98□□□□□ -0.33
SHH-201ENST00000297261 SEBOXQ9HB31 216 aaPredicted RBP12.98□□□□□ -0.33
SHH-201ENST00000297261 MED13LQ71F56 2210 aa12.98□□□□□ -0.33
SHH-201ENST00000297261 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.98□□□□□ -0.33
SHH-201ENST00000297261 IGHV3-48P01763 117 aa12.98□□□□□ -0.33
SHH-201ENST00000297261 REG1BP48304 166 aa12.98□□□□□ -0.33
SHH-201ENST00000297261 C5orf24Q7Z6I8 188 aa12.98□□□□□ -0.33
SHH-201ENST00000297261 hCG_38984A0A1B0GV85 526 aa12.98□□□□□ -0.33
SHH-201ENST00000297261 HGFACQ04756 655 aa12.98□□□□□ -0.33
SHH-201ENST00000297261 PET117Q6UWS5 81 aa12.98□□□□□ -0.33
SHH-201ENST00000297261 MOGAT3Q86VF5 341 aa12.98□□□□□ -0.33
SHH-201ENST00000297261 ZNF71Q9NQZ8 489 aaPredicted RBP12.98□□□□□ -0.33
SHH-201ENST00000297261 CGAP01215 116 aa12.97□□□□□ -0.33
SHH-201ENST00000297261 Q0VFX4 171 aa12.97□□□□□ -0.33
SHH-201ENST00000297261 PGLYRP4Q96LB8 373 aa12.97□□□□□ -0.33
SHH-201ENST00000297261 TMEM208Q9BTX3 173 aa12.97□□□□□ -0.33
SHH-201ENST00000297261 TMEM242Q9NWH2 141 aa12.97□□□□□ -0.33
SHH-201ENST00000297261 TCF19Q9Y242 345 aa12.97□□□□□ -0.33
SHH-201ENST00000297261 AMMECR1Q9Y4X0 333 aaPredicted RBP12.97□□□□□ -0.33
SHH-201ENST00000297261 C5orf63A6NC05 138 aa12.97□□□□□ -0.33
SHH-201ENST00000297261 FBXW9Q5XUX1 488 aa12.97□□□□□ -0.33
SHH-201ENST00000297261 FDCSPQ8NFU4 85 aa12.97□□□□□ -0.33
SHH-201ENST00000297261 PRDM13Q9H4Q3 707 aa12.97□□□□□ -0.33
SHH-201ENST00000297261 PCDH15Q96QU1 1955 aa12.97□□□□□ -0.33
SHH-201ENST00000297261 PGPA6NDG6 321 aa12.97□□□□□ -0.33
SHH-201ENST00000297261 Q1RN00 199 aa12.97□□□□□ -0.33
SHH-201ENST00000297261 PEAR1Q5VY43 1037 aaPredicted RBP12.97□□□□□ -0.33
SHH-201ENST00000297261 LRTM2Q8N967 370 aa12.97□□□□□ -0.33
SHH-201ENST00000297261 TMEM54Q969K7 222 aa12.97□□□□□ -0.33
SHH-201ENST00000297261 TNXAQ16473 311 aa12.96□□□□□ -0.33
SHH-201ENST00000297261 C1orf194Q5T5A4 169 aa12.96□□□□□ -0.33
SHH-201ENST00000297261 SLC35E4Q6ICL7 350 aa12.96□□□□□ -0.33
SHH-201ENST00000297261 STPG3Q8N7X2 389 aa12.96□□□□□ -0.33
SHH-201ENST00000297261 KCNS1Q96KK3 526 aa12.96□□□□□ -0.33
SHH-201ENST00000297261 KLF2Q9Y5W3 355 aaPredicted RBP12.96□□□□□ -0.33
SHH-201ENST00000297261 A0A1W2PRD5 423 aa12.96□□□□□ -0.33
SHH-201ENST00000297261 A0A1W2PRF3 423 aa12.96□□□□□ -0.33
SHH-201ENST00000297261 A0A1W2PRM7 423 aa12.96□□□□□ -0.33
SHH-201ENST00000297261 A8MWP6 167 aa12.96□□□□□ -0.33
SHH-201ENST00000297261 H3BTX0 84 aa12.96□□□□□ -0.33
SHH-201ENST00000297261 TMPRSS2O15393 492 aa12.96□□□□□ -0.33
SHH-201ENST00000297261 KRTCAP3Q53RY4 240 aa12.96□□□□□ -0.33
SHH-201ENST00000297261 RIPPLY2Q5TAB7 128 aa12.96□□□□□ -0.33
SHH-201ENST00000297261 GBGT1Q8N5D6 347 aa12.96□□□□□ -0.33
SHH-201ENST00000297261 NEU1Q99519 415 aa12.96□□□□□ -0.33
SHH-201ENST00000297261 NGBQ9NPG2 151 aa12.96□□□□□ -0.33
SHH-201ENST00000297261 hADV38S2A0JD32 116 aa12.96□□□□□ -0.34
SHH-201ENST00000297261 PINLYPA6NC86 204 aa12.96□□□□□ -0.34
SHH-201ENST00000297261 BTF3P20290 206 aaKnown RBP12.96□□□□□ -0.34
SHH-201ENST00000297261 PRDX2P32119 198 aa12.96□□□□□ -0.34
SHH-201ENST00000297261 NIT1Q86X76 327 aa12.96□□□□□ -0.34
SHH-201ENST00000297261 NABP2Q9BQ15 211 aa12.96□□□□□ -0.34
SHH-201ENST00000297261 TRBV9A0A0B4J1U6 114 aa12.96□□□□□ -0.34
SHH-201ENST00000297261 GCSHP23434 173 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms