RNA–Protein interactions for RNA: ENST00000249499.7

HOXD9-201, Transcript of homeobox D9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD9, Length 1,870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9-201ENST00000249499 P2RX4Q99571 388 aa18.65■□□□□ 0.58
HOXD9-201ENST00000249499 CBLN4Q9NTU7 201 aa18.65■□□□□ 0.58
HOXD9-201ENST00000249499 KBTBD11O94819 623 aa18.65■□□□□ 0.58
HOXD9-201ENST00000249499 COL8A2P25067 703 aa18.65■□□□□ 0.58
HOXD9-201ENST00000249499 PRCDQ00LT1 54 aa18.65■□□□□ 0.58
HOXD9-201ENST00000249499 SLC24A4Q8NFF2 622 aa18.65■□□□□ 0.58
HOXD9-201ENST00000249499 OR4A5Q8NH83 315 aa18.65■□□□□ 0.58
HOXD9-201ENST00000249499 TUBA4BQ9H853 241 aa18.65■□□□□ 0.58
HOXD9-201ENST00000249499 RRHO14718 337 aa18.64■□□□□ 0.57
HOXD9-201ENST00000249499 NPY1RP25929 384 aa18.64■□□□□ 0.57
HOXD9-201ENST00000249499 AWAT1Q58HT5 328 aa18.64■□□□□ 0.57
HOXD9-201ENST00000249499 FFAR4Q5NUL3 377 aa18.64■□□□□ 0.57
HOXD9-201ENST00000249499 OR10G9Q8NGN4 311 aa18.64■□□□□ 0.57
HOXD9-201ENST00000249499 OR10G7Q8NGN6 311 aa18.64■□□□□ 0.57
HOXD9-201ENST00000249499 ACTR3CQ9C0K3 210 aaPredicted RBP18.64■□□□□ 0.57
HOXD9-201ENST00000249499 ZNRD1Q9P1U0 126 aa18.64■□□□□ 0.57
HOXD9-201ENST00000249499 H7C2Y5 167 aa18.63■□□□□ 0.57
HOXD9-201ENST00000249499 IGKV1D-33P01593 117 aa18.63■□□□□ 0.57
HOXD9-201ENST00000249499 IGKV1-33P01594 117 aa18.63■□□□□ 0.57
HOXD9-201ENST00000249499 ACOT6Q3I5F7 207 aaPredicted RBP18.63■□□□□ 0.57
HOXD9-201ENST00000249499 ZNF841Q6ZN19 808 aa18.63■□□□□ 0.57
HOXD9-201ENST00000249499 SSX7Q7RTT5 188 aa18.63■□□□□ 0.57
HOXD9-201ENST00000249499 C11orf42Q8N5U0 333 aa18.63■□□□□ 0.57
HOXD9-201ENST00000249499 OR4C13Q8NGP0 309 aa18.63■□□□□ 0.57
HOXD9-201ENST00000249499 VSTM2AQ8TAG5 236 aa18.63■□□□□ 0.57
HOXD9-201ENST00000249499 RXFP4Q8TDU9 374 aa18.63■□□□□ 0.57
HOXD9-201ENST00000249499 NABP2Q9BQ15 211 aa18.63■□□□□ 0.57
HOXD9-201ENST00000249499 TMEM133Q9H2Q1 129 aa18.63■□□□□ 0.57
HOXD9-201ENST00000249499 KCNIP2Q9NS61 270 aa18.63■□□□□ 0.57
HOXD9-201ENST00000249499 GNG13Q9P2W3 67 aa18.63■□□□□ 0.57
HOXD9-201ENST00000249499 ANKHD1Q8IWZ3 2542 aaKnown RBP18.63■□□□□ 0.57
HOXD9-201ENST00000249499 SRRM4A7MD48 611 aaKnown RBP18.63■□□□□ 0.57
HOXD9-201ENST00000249499 CYB5BO43169 146 aa18.63■□□□□ 0.57
HOXD9-201ENST00000249499 RAB13P51153 203 aa18.63■□□□□ 0.57
HOXD9-201ENST00000249499 RBMS3Q6XE24 437 aaKnown RBP18.63■□□□□ 0.57
HOXD9-201ENST00000249499 ABHD12Q8N2K0 398 aa18.63■□□□□ 0.57
HOXD9-201ENST00000249499 Q8N7P7 452 aa18.63■□□□□ 0.57
HOXD9-201ENST00000249499 C8orf46Q8TAG6 207 aa18.63■□□□□ 0.57
HOXD9-201ENST00000249499 TMEM170AQ8WVE7 144 aa18.63■□□□□ 0.57
HOXD9-201ENST00000249499 LHX4Q969G2 390 aa18.63■□□□□ 0.57
HOXD9-201ENST00000249499 FLYWCH2Q96CP2 140 aaKnown RBP18.63■□□□□ 0.57
HOXD9-201ENST00000249499 NEIL1Q96FI4 390 aaPredicted RBP18.63■□□□□ 0.57
HOXD9-201ENST00000249499 PLEKHA3Q9HB20 300 aa18.63■□□□□ 0.57
HOXD9-201ENST00000249499 C7orf77A4D0Y5 90 aa18.62■□□□□ 0.57
HOXD9-201ENST00000249499 M0R036 132 aa18.62■□□□□ 0.57
HOXD9-201ENST00000249499 IFNA4P05014 189 aa18.62■□□□□ 0.57
HOXD9-201ENST00000249499 SAA1P0DJI8 122 aaPredicted RBP18.62■□□□□ 0.57
HOXD9-201ENST00000249499 MC5RP33032 325 aa18.62■□□□□ 0.57
HOXD9-201ENST00000249499 RPS16P62249 146 aaKnown RBP18.62■□□□□ 0.57
HOXD9-201ENST00000249499 NEU4Q8WWR8 484 aaPredicted RBP18.62■□□□□ 0.57
HOXD9-201ENST00000249499 HARBI1Q96MB7 349 aa18.62■□□□□ 0.57
HOXD9-201ENST00000249499 MIOXQ9UGB7 285 aa18.62■□□□□ 0.57
HOXD9-201ENST00000249499 VAX2Q9UIW0 290 aa18.62■□□□□ 0.57
HOXD9-201ENST00000249499 PKDREJQ9NTG1 2253 aa18.62■□□□□ 0.57
HOXD9-201ENST00000249499 INS-IGF2F8WCM5 200 aa18.61■□□□□ 0.57
HOXD9-201ENST00000249499 OPRK1P41145 380 aa18.61■□□□□ 0.57
HOXD9-201ENST00000249499 TMEM249Q2WGJ8 235 aa18.61■□□□□ 0.57
HOXD9-201ENST00000249499 C11orf71Q6IPW1 123 aa18.61■□□□□ 0.57
HOXD9-201ENST00000249499 TET2Q6N021 2002 aaPredicted RBP18.61■□□□□ 0.57
HOXD9-201ENST00000249499 TREML4Q6UXN2 200 aa18.61■□□□□ 0.57
HOXD9-201ENST00000249499 NPVFQ9HCQ7 196 aa18.61■□□□□ 0.57
HOXD9-201ENST00000249499 RPS10P5Q9NQ39 176 aa18.61■□□□□ 0.57
HOXD9-201ENST00000249499 WASHC3Q9Y3C0 194 aa18.61■□□□□ 0.57
HOXD9-201ENST00000249499 NBASA2RRP1 2371 aa18.61■□□□□ 0.57
HOXD9-201ENST00000249499 USF1P22415 310 aaPredicted RBP18.6■□□□□ 0.57
HOXD9-201ENST00000249499 C15orf54Q8N8G6 183 aa18.6■□□□□ 0.57
HOXD9-201ENST00000249499 RAB1CQ92928 201 aa18.6■□□□□ 0.57
HOXD9-201ENST00000249499 ZNF462Q96JM2 2506 aa18.6■□□□□ 0.57
HOXD9-201ENST00000249499 RELNP78509 3460 aa18.6■□□□□ 0.57
HOXD9-201ENST00000249499 SEC14L6B5MCN3 397 aa18.6■□□□□ 0.57
HOXD9-201ENST00000249499 TGIF2LXQ8IUE1 241 aa18.6■□□□□ 0.57
HOXD9-201ENST00000249499 CYB561D1Q8N8Q1 229 aa18.6■□□□□ 0.57
HOXD9-201ENST00000249499 TEX50A0A1B0GTY4 177 aa18.59■□□□□ 0.57
HOXD9-201ENST00000249499 AGAP20933 346 aa18.59■□□□□ 0.57
HOXD9-201ENST00000249499 ZNF843Q8N446 348 aa18.59■□□□□ 0.57
HOXD9-201ENST00000249499 OR8B3Q8NGG8 313 aa18.59■□□□□ 0.57
HOXD9-201ENST00000249499 TMEM167AQ8TBQ9 72 aa18.59■□□□□ 0.57
HOXD9-201ENST00000249499 OR8B2Q96RD0 313 aa18.59■□□□□ 0.57
HOXD9-201ENST00000249499 LSM4Q9Y4Z0 139 aaKnown RBP18.59■□□□□ 0.57
HOXD9-201ENST00000249499 ZFP92A6NM28 416 aa18.58■□□□□ 0.57
HOXD9-201ENST00000249499 LYNX1G3V0Z9 82 aa18.58■□□□□ 0.57
HOXD9-201ENST00000249499 SNRNP70P08621 437 aaKnown RBP18.58■□□□□ 0.57
HOXD9-201ENST00000249499 LYNX1P0DP58 116 aa18.58■□□□□ 0.57
HOXD9-201ENST00000249499 PRRX1P54821 245 aa18.58■□□□□ 0.57
HOXD9-201ENST00000249499 FGF8P55075 233 aaPredicted RBP18.58■□□□□ 0.57
HOXD9-201ENST00000249499 AKIRIN2Q53H80 203 aa18.58■□□□□ 0.57
HOXD9-201ENST00000249499 SLC35E3Q7Z769 313 aa18.58■□□□□ 0.57
HOXD9-201ENST00000249499 TIMD4Q96H15 378 aa18.58■□□□□ 0.57
HOXD9-201ENST00000249499 MANBALQ9NQG1 85 aa18.58■□□□□ 0.57
HOXD9-201ENST00000249499 SMCO3A2RU48 225 aa18.58■□□□□ 0.56
HOXD9-201ENST00000249499 CA2P00918 260 aa18.58■□□□□ 0.56
HOXD9-201ENST00000249499 FLI1Q01543 452 aaPredicted RBP18.58■□□□□ 0.56
HOXD9-201ENST00000249499 BSXQ3C1V8 233 aa18.58■□□□□ 0.56
HOXD9-201ENST00000249499 C2orf83Q53S99 150 aa18.58■□□□□ 0.56
HOXD9-201ENST00000249499 DTX2Q86UW9 622 aa18.58■□□□□ 0.56
HOXD9-201ENST00000249499 NIPSNAP3BQ9BS92 247 aa18.58■□□□□ 0.56
HOXD9-201ENST00000249499 hCG_1809904A0A1W2PP81 198 aa18.57■□□□□ 0.56
HOXD9-201ENST00000249499 A0A1W2PPE2 198 aa18.57■□□□□ 0.56
HOXD9-201ENST00000249499 A0A1W2PR64 198 aa18.57■□□□□ 0.56
HOXD9-201ENST00000249499 A0A1W2PRV1 198 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms