RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 E7EUB6 86 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 FGF16O43320 207 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 DEFA4P12838 97 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 AGAP20933 346 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 COL8A1P27658 744 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 LCN2P80188 198 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 LDLRAD2Q5SZI1 272 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 DTX2Q86UW9 622 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 OR8B3Q8NGG8 313 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 OR4S2Q8NH73 311 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 RAB1CQ92928 201 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 OR8B2Q96RD0 313 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 VSIRQ9H7M9 311 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 IGHV2-26A0A0B4J1V2 119 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 UBE2L5PA0A1B0GUS4 154 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 RRHO14718 337 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 GAPDHP04406 335 aaKnown RBP6.33□□□□□ -1.4
NEK3-207ENST00000617054 SPP1P10451 314 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 CNTFRP26992 372 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 ERVK-16P61578 105 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 PJVKQ0ZLH3 352 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 FAM213BQ8TBF2 198 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 TIMD4Q96H15 378 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 GINS3Q9BRX5 216 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 TMEM133Q9H2Q1 129 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 RAB9BQ9NP90 201 aa6.33□□□□□ -1.4
NEK3-207ENST00000617054 ANKRD17O75179 2603 aaKnown RBP6.33□□□□□ -1.4
NEK3-207ENST00000617054 IFNA10P01566 189 aa6.32□□□□□ -1.4
NEK3-207ENST00000617054 IGFBP2P18065 325 aa6.32□□□□□ -1.4
NEK3-207ENST00000617054 THBS3P49746 956 aa6.32□□□□□ -1.4
NEK3-207ENST00000617054 SULT1A2P50226 295 aa6.32□□□□□ -1.4
NEK3-207ENST00000617054 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.32□□□□□ -1.4
NEK3-207ENST00000617054 BPIFCQ8NFQ6 507 aa6.32□□□□□ -1.4
NEK3-207ENST00000617054 OR10W1Q8NGF6 305 aa6.32□□□□□ -1.4
NEK3-207ENST00000617054 NEIL1Q96FI4 390 aaPredicted RBP6.32□□□□□ -1.4
NEK3-207ENST00000617054 SMIM8Q96KF7 97 aa6.32□□□□□ -1.4
NEK3-207ENST00000617054 BPESC1Q9GZL8 116 aa6.32□□□□□ -1.4
NEK3-207ENST00000617054 CHODLQ9H9P2 273 aa6.32□□□□□ -1.4
NEK3-207ENST00000617054 HEYLQ9NQ87 328 aaPredicted RBP6.32□□□□□ -1.4
NEK3-207ENST00000617054 MMP26Q9NRE1 261 aa6.32□□□□□ -1.4
NEK3-207ENST00000617054 TPSG1Q9NRR2 321 aa6.32□□□□□ -1.4
NEK3-207ENST00000617054 HILPDAQ9Y5L2 63 aa6.32□□□□□ -1.4
NEK3-207ENST00000617054 H0YJW9 148 aa6.32□□□□□ -1.4
NEK3-207ENST00000617054 FGF2P09038 288 aa6.32□□□□□ -1.4
NEK3-207ENST00000617054 SAA1P0DJI8 122 aaPredicted RBP6.32□□□□□ -1.4
NEK3-207ENST00000617054 GPR6P46095 362 aaPredicted RBP6.32□□□□□ -1.4
NEK3-207ENST00000617054 SRSF1Q07955 248 aaKnown RBP eCLIP6.32□□□□□ -1.4
NEK3-207ENST00000617054 C10orf55Q5SWW7 151 aa6.32□□□□□ -1.4
NEK3-207ENST00000617054 ZNF833PQ6ZTB9 187 aa6.32□□□□□ -1.4
NEK3-207ENST00000617054 Q8N7P7 452 aa6.32□□□□□ -1.4
NEK3-207ENST00000617054 MARC2Q969Z3 335 aa6.32□□□□□ -1.4
NEK3-207ENST00000617054 HARBI1Q96MB7 349 aa6.32□□□□□ -1.4
NEK3-207ENST00000617054 ATP5SQ99766 215 aa6.32□□□□□ -1.4
NEK3-207ENST00000617054 COA4Q9NYJ1 87 aa6.32□□□□□ -1.4
NEK3-207ENST00000617054 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.32□□□□□ -1.46e-7■■■■□ 25.1
NEK3-207ENST00000617054 HMGB3O15347 200 aaKnown RBP6.31□□□□□ -1.4
NEK3-207ENST00000617054 CAMLGP49069 296 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 CCL20P78556 96 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 SLC38A11Q08AI6 406 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 ZNF266Q14584 549 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 LHFPL4Q7Z7J7 247 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 OR9G1Q8NH87 305 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 C17orf50Q8WW18 174 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 NEU4Q8WWR8 484 aaPredicted RBP6.31□□□□□ -1.4
NEK3-207ENST00000617054 CLCC1Q96S66 551 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 SSBP3Q9BWW4 388 aaPredicted RBP6.31□□□□□ -1.4
NEK3-207ENST00000617054 ARV1Q9H2C2 271 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 MIOXQ9UGB7 285 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 CACFD1Q9UGQ2 172 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 A8MXK9 166 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 C9JQL5 133 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 ITGB1BP1O14713 200 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 ATG12O94817 140 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 APOC3P02656 99 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 HOXA1P49639 335 aaPredicted RBP6.31□□□□□ -1.4
NEK3-207ENST00000617054 ELLP55199 621 aaPredicted RBP6.31□□□□□ -1.4
NEK3-207ENST00000617054 EIF5AP63241 154 aaKnown RBP6.31□□□□□ -1.4
NEK3-207ENST00000617054 MLANAQ16655 118 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 RTL8BQ17RB0 113 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 TGIF2LXQ8IUE1 241 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 TMEM170AQ8WVE7 144 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 ST6GALNAC6Q969X2 333 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 NABP2Q9BQ15 211 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 FAM212BQ9NTI7 297 aaPredicted RBP6.31□□□□□ -1.4
NEK3-207ENST00000617054 TCF19Q9Y242 345 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 STRAPQ9Y3F4 350 aaKnown RBP6.31□□□□□ -1.4
NEK3-207ENST00000617054 HELZ2Q9BYK8 2649 aaKnown RBP6.31□□□□□ -1.4
NEK3-207ENST00000617054 DOPEY2Q9Y3R5 2298 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 LOC105371242A0A075B767 164 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 SMCO3A2RU48 225 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 IGHV3-48P01763 117 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 MMP9P14780 707 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 TNP2Q05952 138 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 BAXQ07812 192 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 FBLN7Q53RD9 439 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 EIF5AL1Q6IS14 154 aaKnown RBP6.31□□□□□ -1.4
NEK3-207ENST00000617054 TMEM14EPQ6UXP3 125 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 MOB3BQ86TA1 216 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 TCTEX1D1Q8N7M0 179 aa6.31□□□□□ -1.4
NEK3-207ENST00000617054 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms