RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 TMEM230Q96A57 120 aa15.21■□□□□ 0.03
UPF1-209ENST00000600310 NAA60Q9H7X0 242 aa15.21■□□□□ 0.03
UPF1-209ENST00000600310 ZNF430Q9H8G1 570 aaPredicted RBP15.21■□□□□ 0.03
UPF1-209ENST00000600310 FBXO7Q9Y3I1 522 aa15.21■□□□□ 0.03
UPF1-209ENST00000600310 TEX13DA0A0J9YY54 714 aaPredicted RBP15.2■□□□□ 0.02
UPF1-209ENST00000600310 CNIH1O95406 144 aa15.2■□□□□ 0.02
UPF1-209ENST00000600310 RPA2P15927 270 aa15.2■□□□□ 0.02
UPF1-209ENST00000600310 VDAC1P21796 283 aa15.2■□□□□ 0.02
UPF1-209ENST00000600310 UCP1P25874 307 aa15.2■□□□□ 0.02
UPF1-209ENST00000600310 BTCP35070 178 aa15.2■□□□□ 0.02
UPF1-209ENST00000600310 CCR6P51684 374 aa15.2■□□□□ 0.02
UPF1-209ENST00000600310 GNB1P62873 340 aa15.2■□□□□ 0.02
UPF1-209ENST00000600310 SLC35B1P78383 322 aa15.2■□□□□ 0.02
UPF1-209ENST00000600310 CFHR3Q02985 330 aa15.2■□□□□ 0.02
UPF1-209ENST00000600310 SP6Q3SY56 376 aa15.2■□□□□ 0.02
UPF1-209ENST00000600310 C10orf99Q6UWK7 81 aa15.2■□□□□ 0.02
UPF1-209ENST00000600310 ZNF329Q86UD4 541 aa15.2■□□□□ 0.02
UPF1-209ENST00000600310 DMBX1Q8NFW5 382 aa15.2■□□□□ 0.02
UPF1-209ENST00000600310 SGMS2Q8NHU3 365 aa15.2■□□□□ 0.02
UPF1-209ENST00000600310 TMEM140Q9NV12 185 aa15.2■□□□□ 0.02
UPF1-209ENST00000600310 NUBP2Q9Y5Y2 271 aa15.2■□□□□ 0.02
UPF1-209ENST00000600310 WSB1Q9Y6I7 421 aa15.2■□□□□ 0.02
UPF1-209ENST00000600310 TRAV41A0A0B4J266 112 aa15.19■□□□□ 0.02
UPF1-209ENST00000600310 MARCH11A6NNE9 402 aa15.19■□□□□ 0.02
UPF1-209ENST00000600310 UPK2O00526 184 aa15.19■□□□□ 0.02
UPF1-209ENST00000600310 LYRM1O43325 122 aa15.19■□□□□ 0.02
UPF1-209ENST00000600310 FBXO24O75426 580 aa15.19■□□□□ 0.02
UPF1-209ENST00000600310 UPK1BO75841 260 aa15.19■□□□□ 0.02
UPF1-209ENST00000600310 NDUFB6O95139 128 aa15.19■□□□□ 0.02
UPF1-209ENST00000600310 KRASP01116 189 aa15.19■□□□□ 0.02
UPF1-209ENST00000600310 IGKV1-39P01597 117 aa15.19■□□□□ 0.02
UPF1-209ENST00000600310 IGKV1D-39P04432 117 aa15.19■□□□□ 0.02
UPF1-209ENST00000600310 OR5AC1P0C628 307 aa15.19■□□□□ 0.02
UPF1-209ENST00000600310 TNXAQ16473 311 aa15.19■□□□□ 0.02
UPF1-209ENST00000600310 C19orf54Q5BKX5 351 aa15.19■□□□□ 0.02
UPF1-209ENST00000600310 SGPP2Q8IWX5 399 aa15.19■□□□□ 0.02
UPF1-209ENST00000600310 COMMD1Q8N668 190 aa15.19■□□□□ 0.02
UPF1-209ENST00000600310 ABHD5Q8WTS1 349 aa15.19■□□□□ 0.02
UPF1-209ENST00000600310 G3V318 75 aa15.18■□□□□ 0.02
UPF1-209ENST00000600310 ACTL6BO94805 426 aa15.18■□□□□ 0.02
UPF1-209ENST00000600310 CD28P10747 220 aa15.18■□□□□ 0.02
UPF1-209ENST00000600310 PPIFP30405 207 aaKnown RBP15.18■□□□□ 0.02
UPF1-209ENST00000600310 MAS1LP35410 378 aa15.18■□□□□ 0.02
UPF1-209ENST00000600310 G6PCP35575 357 aa15.18■□□□□ 0.02
UPF1-209ENST00000600310 TMEM267Q0VDI3 215 aaPredicted RBP15.18■□□□□ 0.02
UPF1-209ENST00000600310 C11orf44Q8N8P7 122 aa15.18■□□□□ 0.02
UPF1-209ENST00000600310 OR4X2Q8NGF9 303 aa15.18■□□□□ 0.02
UPF1-209ENST00000600310 GRPEL2Q8TAA5 225 aa15.18■□□□□ 0.02
UPF1-209ENST00000600310 GLYATL2Q8WU03 294 aa15.18■□□□□ 0.02
UPF1-209ENST00000600310 GALNT14Q96FL9 552 aa15.18■□□□□ 0.02
UPF1-209ENST00000600310 SEC22AQ96IW7 307 aa15.18■□□□□ 0.02
UPF1-209ENST00000600310 FAM103A1Q9BTL3 118 aaKnown RBP15.18■□□□□ 0.02
UPF1-209ENST00000600310 KCNIP3Q9Y2W7 256 aa15.18■□□□□ 0.02
UPF1-209ENST00000600310 IGHG4P01861 327 aa15.17■□□□□ 0.02
UPF1-209ENST00000600310 FGF2P09038 288 aa15.17■□□□□ 0.02
UPF1-209ENST00000600310 AKR1C4P17516 323 aa15.17■□□□□ 0.02
UPF1-209ENST00000600310 RPL8P62917 257 aaKnown RBP15.17■□□□□ 0.02
UPF1-209ENST00000600310 CD83Q01151 205 aa15.17■□□□□ 0.02
UPF1-209ENST00000600310 DHODHQ02127 395 aa15.17■□□□□ 0.02
UPF1-209ENST00000600310 ECSCRQ19T08 205 aa15.17■□□□□ 0.02
UPF1-209ENST00000600310 TRIM16LQ309B1 348 aa15.17■□□□□ 0.02
UPF1-209ENST00000600310 AKIRIN2Q53H80 203 aa15.17■□□□□ 0.02
UPF1-209ENST00000600310 TCTEX1D4Q5JR98 221 aa15.17■□□□□ 0.02
UPF1-209ENST00000600310 TMED4Q7Z7H5 227 aa15.17■□□□□ 0.02
UPF1-209ENST00000600310 MINDY2Q8NBR6 621 aa15.17■□□□□ 0.02
UPF1-209ENST00000600310 SRSF12Q8WXF0 261 aaKnown RBP15.17■□□□□ 0.02
UPF1-209ENST00000600310 TMEM222Q9H0R3 208 aa15.17■□□□□ 0.02
UPF1-209ENST00000600310 ANK2Q01484 3957 aa15.17■□□□□ 0.02
UPF1-209ENST00000600310 PLXNB1O43157 2135 aa15.17■□□□□ 0.02
UPF1-209ENST00000600310 NBEAL1Q6ZS30 2694 aa15.16■□□□□ 0.02
UPF1-209ENST00000600310 TRAV3A0A0B4J244 114 aa15.16■□□□□ 0.02
UPF1-209ENST00000600310 CDS2O95674 445 aa15.16■□□□□ 0.02
UPF1-209ENST00000600310 HLA-GP17693 338 aa15.16■□□□□ 0.02
UPF1-209ENST00000600310 SUPT4H1P63272 117 aaKnown RBP15.16■□□□□ 0.02
UPF1-209ENST00000600310 IFITM3Q01628 133 aa15.16■□□□□ 0.02
UPF1-209ENST00000600310 TMEM128Q5BJH2 165 aa15.16■□□□□ 0.02
UPF1-209ENST00000600310 TEX38Q6PEX7 206 aa15.16■□□□□ 0.02
UPF1-209ENST00000600310 UNQ5815/PRO19632Q6UWF5 114 aa15.16■□□□□ 0.02
UPF1-209ENST00000600310 CENPSQ8N2Z9 138 aa15.16■□□□□ 0.02
UPF1-209ENST00000600310 LFNGQ8NES3 379 aa15.16■□□□□ 0.02
UPF1-209ENST00000600310 TMEM68Q96MH6 324 aa15.16■□□□□ 0.02
UPF1-209ENST00000600310 TBC1D24Q9ULP9 559 aa15.16■□□□□ 0.02
UPF1-209ENST00000600310 MSGN1A6NI15 193 aa15.15■□□□□ 0.02
UPF1-209ENST00000600310 ATG12O94817 140 aa15.15■□□□□ 0.02
UPF1-209ENST00000600310 ELANEP08246 267 aa15.15■□□□□ 0.02
UPF1-209ENST00000600310 SLC6A1P30531 599 aa15.15■□□□□ 0.02
UPF1-209ENST00000600310 FOXE3Q13461 319 aa15.15■□□□□ 0.02
UPF1-209ENST00000600310 ASAH1Q13510 395 aa15.15■□□□□ 0.02
UPF1-209ENST00000600310 C10orf55Q5SWW7 151 aa15.15■□□□□ 0.02
UPF1-209ENST00000600310 H2BFWTQ7Z2G1 175 aa15.15■□□□□ 0.02
UPF1-209ENST00000600310 RNF152Q8N8N0 203 aa15.15■□□□□ 0.02
UPF1-209ENST00000600310 CITED2Q99967 270 aaPredicted RBP15.15■□□□□ 0.02
UPF1-209ENST00000600310 FOXA2Q9Y261 457 aaPredicted RBP15.15■□□□□ 0.02
UPF1-209ENST00000600310 A0A1W2PN81 502 aa15.14■□□□□ 0.01
UPF1-209ENST00000600310 SNAPC5O75971 98 aa15.14■□□□□ 0.01
UPF1-209ENST00000600310 IGKV1-5P01602 117 aa15.14■□□□□ 0.01
UPF1-209ENST00000600310 OR9G9P0C7N8 305 aa15.14■□□□□ 0.01
UPF1-209ENST00000600310 CHRNA7P36544 502 aa15.14■□□□□ 0.01
UPF1-209ENST00000600310 RPL27AP46776 148 aaKnown RBP15.14■□□□□ 0.01
UPF1-209ENST00000600310 TMEM187Q14656 261 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms