RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 OR2A7Q96R45 310 aa16.42■□□□□ 0.22
CLN3-212ENST00000564574 FBXL15Q9H469 300 aa16.42■□□□□ 0.22
CLN3-212ENST00000564574 TMEM140Q9NV12 185 aa16.42■□□□□ 0.22
CLN3-212ENST00000564574 SIGLEC9Q9Y336 463 aa16.42■□□□□ 0.22
CLN3-212ENST00000564574 KBTBD11O94819 623 aa16.41■□□□□ 0.22
CLN3-212ENST00000564574 SSX9Q7RTT3 188 aa16.41■□□□□ 0.22
CLN3-212ENST00000564574 H2BFWTQ7Z2G1 175 aa16.41■□□□□ 0.22
CLN3-212ENST00000564574 VKORC1L1Q8N0U8 176 aa16.41■□□□□ 0.22
CLN3-212ENST00000564574 SLC35G3Q8N808 338 aa16.41■□□□□ 0.22
CLN3-212ENST00000564574 TMEM167AQ8TBQ9 72 aa16.41■□□□□ 0.22
CLN3-212ENST00000564574 RRNAD1Q96FB5 475 aaKnown RBP16.41■□□□□ 0.22
CLN3-212ENST00000564574 NPFFR1Q9GZQ6 430 aa16.41■□□□□ 0.22
CLN3-212ENST00000564574 PRR13Q9NZ81 148 aa16.41■□□□□ 0.22
CLN3-212ENST00000564574 MMP24Q9Y5R2 645 aa16.41■□□□□ 0.22
CLN3-212ENST00000564574 C7orf66A4D0T2 115 aa16.4■□□□□ 0.22
CLN3-212ENST00000564574 IGKV1-5P01602 117 aa16.4■□□□□ 0.22
CLN3-212ENST00000564574 IL6RP08887 468 aaPredicted RBP16.4■□□□□ 0.22
CLN3-212ENST00000564574 FGF2P09038 288 aa16.4■□□□□ 0.22
CLN3-212ENST00000564574 VDAC1P21796 283 aa16.4■□□□□ 0.22
CLN3-212ENST00000564574 TATDN3Q17R31 274 aa16.4■□□□□ 0.22
CLN3-212ENST00000564574 LIN54Q6MZP7 749 aa16.4■□□□□ 0.22
CLN3-212ENST00000564574 PPP1R27Q86WC6 154 aa16.4■□□□□ 0.22
CLN3-212ENST00000564574 C12orf45Q8N5I9 185 aaPredicted RBP16.4■□□□□ 0.22
CLN3-212ENST00000564574 RNASE11Q8TAA1 199 aaKnown RBP16.4■□□□□ 0.22
CLN3-212ENST00000564574 RANBP3Q9H6Z4 567 aaPredicted RBP16.4■□□□□ 0.22
CLN3-212ENST00000564574 UPK2O00526 184 aa16.39■□□□□ 0.21
CLN3-212ENST00000564574 HLA-DRB1P01911 266 aa16.39■□□□□ 0.21
CLN3-212ENST00000564574 AMY1AP04745 511 aa16.39■□□□□ 0.21
CLN3-212ENST00000564574 P0C879 139 aa16.39■□□□□ 0.21
CLN3-212ENST00000564574 MMD2Q8IY49 270 aa16.39■□□□□ 0.21
CLN3-212ENST00000564574 TMED3Q9Y3Q3 217 aa16.39■□□□□ 0.21
CLN3-212ENST00000564574 FAM181BA6NEQ2 426 aa16.38■□□□□ 0.21
CLN3-212ENST00000564574 MAS1LP35410 378 aa16.38■□□□□ 0.21
CLN3-212ENST00000564574 PRSS8Q16651 343 aa16.38■□□□□ 0.21
CLN3-212ENST00000564574 LYZL2Q7Z4W2 148 aa16.38■□□□□ 0.21
CLN3-212ENST00000564574 PRSS22Q9GZN4 317 aa16.38■□□□□ 0.21
CLN3-212ENST00000564574 A0A0B4J293 547 aa16.37■□□□□ 0.21
CLN3-212ENST00000564574 DBX1A6NMT0 343 aa16.37■□□□□ 0.21
CLN3-212ENST00000564574 SNAPC5O75971 98 aa16.37■□□□□ 0.21
CLN3-212ENST00000564574 IFNA21P01568 189 aa16.37■□□□□ 0.21
CLN3-212ENST00000564574 CRYBA1P05813 215 aa16.37■□□□□ 0.21
CLN3-212ENST00000564574 ZNF430Q9H8G1 570 aaPredicted RBP16.37■□□□□ 0.21
CLN3-212ENST00000564574 TPSG1Q9NRR2 321 aa16.37■□□□□ 0.21
CLN3-212ENST00000564574 ALG5Q9Y673 324 aa16.37■□□□□ 0.21
CLN3-212ENST00000564574 CA2P00918 260 aa16.36■□□□□ 0.21
CLN3-212ENST00000564574 OR9G9P0C7N8 305 aa16.36■□□□□ 0.21
CLN3-212ENST00000564574 RPL8P62917 257 aaKnown RBP16.36■□□□□ 0.21
CLN3-212ENST00000564574 RELBQ01201 579 aa16.36■□□□□ 0.21
CLN3-212ENST00000564574 MRGPRG-AS1Q2M3A8 158 aa16.36■□□□□ 0.21
CLN3-212ENST00000564574 NMSQ5H8A3 153 aa16.36■□□□□ 0.21
CLN3-212ENST00000564574 ZNF562Q6V9R5 426 aa16.36■□□□□ 0.21
CLN3-212ENST00000564574 FOXRED2Q8IWF2 684 aa16.36■□□□□ 0.21
CLN3-212ENST00000564574 OR4A16Q8NH70 328 aa16.36■□□□□ 0.21
CLN3-212ENST00000564574 GPR146Q96CH1 333 aa16.36■□□□□ 0.21
CLN3-212ENST00000564574 CLCC1Q96S66 551 aa16.36■□□□□ 0.21
CLN3-212ENST00000564574 OR51J1Q9H342 316 aa16.36■□□□□ 0.21
CLN3-212ENST00000564574 FKBP11Q9NYL4 201 aa16.36■□□□□ 0.21
CLN3-212ENST00000564574 PRNDQ9UKY0 176 aa16.36■□□□□ 0.21
CLN3-212ENST00000564574 A0A0G2JRQ6 117 aa16.35■□□□□ 0.21
CLN3-212ENST00000564574 KCNAB3O43448 404 aa16.35■□□□□ 0.21
CLN3-212ENST00000564574 HOXB5P09067 269 aa16.35■□□□□ 0.21
CLN3-212ENST00000564574 SLC25A6P12236 298 aa16.35■□□□□ 0.21
CLN3-212ENST00000564574 BLCAPP62952 87 aa16.35■□□□□ 0.21
CLN3-212ENST00000564574 SPIN2AQ99865 258 aa16.35■□□□□ 0.21
CLN3-212ENST00000564574 SPIN2BQ9BPZ2 258 aa16.35■□□□□ 0.21
CLN3-212ENST00000564574 IGHV7-81A0A0B4J1V7 117 aa16.34■□□□□ 0.21
CLN3-212ENST00000564574 TRAV3A0A0B4J244 114 aa16.34■□□□□ 0.21
CLN3-212ENST00000564574 A0A1B0GU03 582 aa16.34■□□□□ 0.21
CLN3-212ENST00000564574 C15orf61A6NNL5 157 aa16.34■□□□□ 0.21
CLN3-212ENST00000564574 FCN1O00602 326 aa16.34■□□□□ 0.21
CLN3-212ENST00000564574 ACTL6BO94805 426 aa16.34■□□□□ 0.21
CLN3-212ENST00000564574 IGHG2P01859 326 aa16.34■□□□□ 0.21
CLN3-212ENST00000564574 HLA-GP17693 338 aa16.34■□□□□ 0.21
CLN3-212ENST00000564574 C9orf152Q5JTZ5 239 aa16.34■□□□□ 0.21
CLN3-212ENST00000564574 GGNBP1Q5YKI7 109 aa16.34■□□□□ 0.21
CLN3-212ENST00000564574 UXS1Q8NBZ7 420 aa16.34■□□□□ 0.21
CLN3-212ENST00000564574 COA4Q9NYJ1 87 aa16.34■□□□□ 0.21
CLN3-212ENST00000564574 CACFD1Q9UGQ2 172 aa16.34■□□□□ 0.21
CLN3-212ENST00000564574 TNCP24821 2201 aa16.34■□□□□ 0.21
CLN3-212ENST00000564574 SSNA1O43805 119 aa16.33■□□□□ 0.2
CLN3-212ENST00000564574 ADAP1O75689 374 aa16.33■□□□□ 0.2
CLN3-212ENST00000564574 TSPAN9O75954 239 aa16.33■□□□□ 0.2
CLN3-212ENST00000564574 SULT1A3P0DMM9 295 aa16.33■□□□□ 0.2
CLN3-212ENST00000564574 SULT1A4P0DMN0 295 aa16.33■□□□□ 0.2
CLN3-212ENST00000564574 CX3CL1P78423 397 aa16.33■□□□□ 0.2
CLN3-212ENST00000564574 PJVKQ0ZLH3 352 aa16.33■□□□□ 0.2
CLN3-212ENST00000564574 TNXAQ16473 311 aa16.33■□□□□ 0.2
CLN3-212ENST00000564574 THOC7Q6I9Y2 204 aaKnown RBP16.33■□□□□ 0.2
CLN3-212ENST00000564574 SLC35E3Q7Z769 313 aa16.33■□□□□ 0.2
CLN3-212ENST00000564574 ZNF429Q86V71 674 aa16.33■□□□□ 0.2
CLN3-212ENST00000564574 Q8N2B8 174 aa16.33■□□□□ 0.2
CLN3-212ENST00000564574 HSPB9Q9BQS6 159 aa16.33■□□□□ 0.2
CLN3-212ENST00000564574 ZNF702PQ9H963 129 aa16.33■□□□□ 0.2
CLN3-212ENST00000564574 CTNNBIP1Q9NSA3 81 aaPredicted RBP16.33■□□□□ 0.2
CLN3-212ENST00000564574 CACNG5Q9UF02 275 aa16.33■□□□□ 0.2
CLN3-212ENST00000564574 FOXA2Q9Y261 457 aaPredicted RBP16.33■□□□□ 0.2
CLN3-212ENST00000564574 SH2D7A6NKC9 451 aaPredicted RBP16.32■□□□□ 0.2
CLN3-212ENST00000564574 PLXNB1O43157 2135 aa16.32■□□□□ 0.2
CLN3-212ENST00000564574 RBMXL2O75526 392 aaKnown RBP16.32■□□□□ 0.2
CLN3-212ENST00000564574 NDUFA7O95182 113 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms