RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 CHST1O43916 411 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 KBTBD11O94819 623 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 DUS4LO95620 317 aaKnown RBP7.34□□□□□ -1.23
LDLR-210ENST00000559340 KRASP01116 189 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 IFNA21P01568 189 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 IGLV2-23P01705 113 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 HLA-AP01891 365 aaKnown RBP7.34□□□□□ -1.23
LDLR-210ENST00000559340 IL5P05113 134 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 CRYGBP07316 175 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 FGF2P09038 288 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 SAA1P0DJI8 122 aaPredicted RBP7.34□□□□□ -1.23
LDLR-210ENST00000559340 HKR1P10072 659 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 ANXA7P20073 488 aaKnown RBP7.34□□□□□ -1.23
LDLR-210ENST00000559340 CNTFRP26992 372 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 MECP2P51608 486 aaKnown RBP7.34□□□□□ -1.23
LDLR-210ENST00000559340 BRWD1-AS2P59051 145 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 PPP1R1AQ13522 171 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 ZNF562Q6V9R5 426 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 SSX9Q7RTT3 188 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 SLC35E3Q7Z769 313 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 MRPL41Q8IXM3 137 aaKnown RBP7.34□□□□□ -1.23
LDLR-210ENST00000559340 PUSL1Q8N0Z8 303 aaKnown RBP7.34□□□□□ -1.23
LDLR-210ENST00000559340 FAM71E2Q8N5Q1 922 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 OR4A16Q8NH70 328 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 TMEM167AQ8TBQ9 72 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 LSM10Q969L4 123 aaKnown RBP7.34□□□□□ -1.23
LDLR-210ENST00000559340 RITA1Q96K30 269 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 TMEM68Q96MH6 324 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 TMEM56Q96MV1 263 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 PHB2Q99623 299 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 MARVELD1Q9BSK0 173 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 C16orf95Q9H693 158 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 SHPKQ9UHJ6 478 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 PRNDQ9UKY0 176 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 TMEM56-RWDD3S4R434 201 aa7.34□□□□□ -1.23
LDLR-210ENST00000559340 AP4M1O00189 453 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 UPK2O00526 184 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 IGHG2P01859 326 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 VSIG10L2P0DP72 767 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 VDAC1P21796 283 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 G6PCP35575 357 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 VDAC2P45880 294 aaPredicted RBP7.33□□□□□ -1.24
LDLR-210ENST00000559340 RPL8P62917 257 aaKnown RBP7.33□□□□□ -1.24
LDLR-210ENST00000559340 BLCAPP62952 87 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 SUPT4H1P63272 117 aaKnown RBP7.33□□□□□ -1.24
LDLR-210ENST00000559340 DHRS2Q13268 280 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 PRSS8Q16651 343 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 TMEM268Q5VZI3 342 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 THOC7Q6I9Y2 204 aaKnown RBP7.33□□□□□ -1.24
LDLR-210ENST00000559340 OR4A47Q6IF82 309 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 SELENOHQ8IZQ5 122 aaKnown RBP7.33□□□□□ -1.24
LDLR-210ENST00000559340 Q8N2B8 174 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 LRTM2Q8N967 370 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 ZNF431Q8TF32 576 aaPredicted RBP7.33□□□□□ -1.24
LDLR-210ENST00000559340 ABHD5Q8WTS1 349 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 CASTOR1Q8WTX7 329 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 SEC22AQ96IW7 307 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 CLCC1Q96S66 551 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 SPIN2AQ99865 258 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 SPIN2BQ9BPZ2 258 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 PDCD10Q9BUL8 212 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 COMMD5Q9GZQ3 224 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 OR51J1Q9H342 316 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 TMEM140Q9NV12 185 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 TMED3Q9Y3Q3 217 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 MMP24Q9Y5R2 645 aa7.33□□□□□ -1.24
LDLR-210ENST00000559340 CLPSL1A2RUU4 121 aa7.32□□□□□ -1.24
LDLR-210ENST00000559340 SNRPGP15A8MWD9 76 aa7.32□□□□□ -1.24
LDLR-210ENST00000559340 RBMXL2O75526 392 aaKnown RBP7.32□□□□□ -1.24
LDLR-210ENST00000559340 CA2P00918 260 aa7.32□□□□□ -1.24
LDLR-210ENST00000559340 AMY1AP04745 511 aa7.32□□□□□ -1.24
LDLR-210ENST00000559340 HLA-GP17693 338 aa7.32□□□□□ -1.24
LDLR-210ENST00000559340 SLC35B1P78383 322 aa7.32□□□□□ -1.24
LDLR-210ENST00000559340 FXYD3Q14802 87 aa7.32□□□□□ -1.24
LDLR-210ENST00000559340 TNXAQ16473 311 aa7.32□□□□□ -1.24
LDLR-210ENST00000559340 Q6ZSV7 163 aa7.32□□□□□ -1.24
LDLR-210ENST00000559340 VKORC1L1Q8N0U8 176 aa7.32□□□□□ -1.24
LDLR-210ENST00000559340 OR1L8Q8NGR8 309 aa7.32□□□□□ -1.24
LDLR-210ENST00000559340 CHPT1Q8WUD6 406 aa7.32□□□□□ -1.24
LDLR-210ENST00000559340 ZNF702PQ9H963 129 aa7.32□□□□□ -1.24
LDLR-210ENST00000559340 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.32□□□□□ -1.24
LDLR-210ENST00000559340 ZNF580Q9UK33 172 aa7.32□□□□□ -1.24
LDLR-210ENST00000559340 IGHV7-81A0A0B4J1V7 117 aa7.31□□□□□ -1.24
LDLR-210ENST00000559340 TMEM89A2RUT3 159 aa7.31□□□□□ -1.24
LDLR-210ENST00000559340 IGKV1-39P01597 117 aa7.31□□□□□ -1.24
LDLR-210ENST00000559340 IGKV1D-39P04432 117 aa7.31□□□□□ -1.24
LDLR-210ENST00000559340 IL6RP08887 468 aaPredicted RBP7.31□□□□□ -1.24
LDLR-210ENST00000559340 SULT1A3P0DMM9 295 aa7.31□□□□□ -1.24
LDLR-210ENST00000559340 SULT1A4P0DMN0 295 aa7.31□□□□□ -1.24
LDLR-210ENST00000559340 SLC25A6P12236 298 aa7.31□□□□□ -1.24
LDLR-210ENST00000559340 RPL27AP46776 148 aaKnown RBP7.31□□□□□ -1.24
LDLR-210ENST00000559340 GNB1P62873 340 aa7.31□□□□□ -1.24
LDLR-210ENST00000559340 CX3CL1P78423 397 aa7.31□□□□□ -1.24
LDLR-210ENST00000559340 HSD17B13Q7Z5P4 300 aaPredicted RBP7.31□□□□□ -1.24
LDLR-210ENST00000559340 CENPVQ7Z7K6 275 aaPredicted RBP7.31□□□□□ -1.24
LDLR-210ENST00000559340 C12orf45Q8N5I9 185 aaPredicted RBP7.31□□□□□ -1.24
LDLR-210ENST00000559340 COMMD1Q8N668 190 aa7.31□□□□□ -1.24
LDLR-210ENST00000559340 OR5B3Q8NH48 314 aa7.31□□□□□ -1.24
LDLR-210ENST00000559340 MITD1Q8WV92 249 aa7.31□□□□□ -1.24
LDLR-210ENST00000559340 ARPC1AQ92747 370 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms