RNA–Protein interactions for RNA: ENST00000547247.5

SMARCD1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 1 (best)

Gene SMARCD1, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-203ENST00000547247 ANXA3P12429 323 aa18.3■□□□□ 0.52
SMARCD1-203ENST00000547247 G6PCP35575 357 aa18.3■□□□□ 0.52
SMARCD1-203ENST00000547247 SUPT4H1P63272 117 aaKnown RBP18.3■□□□□ 0.52
SMARCD1-203ENST00000547247 MMD2Q8IY49 270 aa18.3■□□□□ 0.52
SMARCD1-203ENST00000547247 SPATA3Q8NHX4 192 aa18.3■□□□□ 0.52
SMARCD1-203ENST00000547247 C20orf85Q9H1P6 137 aa18.3■□□□□ 0.52
SMARCD1-203ENST00000547247 ZNF430Q9H8G1 570 aaPredicted RBP18.3■□□□□ 0.52
SMARCD1-203ENST00000547247 TMEM140Q9NV12 185 aa18.3■□□□□ 0.52
SMARCD1-203ENST00000547247 HAX1O00165 279 aa18.29■□□□□ 0.52
SMARCD1-203ENST00000547247 PLXNB1O43157 2135 aa18.29■□□□□ 0.52
SMARCD1-203ENST00000547247 PROK1P58294 105 aa18.29■□□□□ 0.52
SMARCD1-203ENST00000547247 UBE2MP61081 183 aaKnown RBP18.29■□□□□ 0.52
SMARCD1-203ENST00000547247 MRGPRG-AS1Q2M3A8 158 aa18.29■□□□□ 0.52
SMARCD1-203ENST00000547247 OR4A5Q8NH83 315 aa18.29■□□□□ 0.52
SMARCD1-203ENST00000547247 ENKURQ8TC29 256 aa18.29■□□□□ 0.52
SMARCD1-203ENST00000547247 SEC22AQ96IW7 307 aa18.29■□□□□ 0.52
SMARCD1-203ENST00000547247 ACTL6BO94805 426 aa18.28■□□□□ 0.52
SMARCD1-203ENST00000547247 ATG12O94817 140 aa18.28■□□□□ 0.52
SMARCD1-203ENST00000547247 CNIH1O95406 144 aa18.28■□□□□ 0.52
SMARCD1-203ENST00000547247 CDS2O95674 445 aa18.28■□□□□ 0.52
SMARCD1-203ENST00000547247 VAMP1P23763 118 aa18.28■□□□□ 0.52
SMARCD1-203ENST00000547247 GNB1P62873 340 aa18.28■□□□□ 0.52
SMARCD1-203ENST00000547247 TMEM187Q14656 261 aa18.28■□□□□ 0.52
SMARCD1-203ENST00000547247 FXYD3Q14802 87 aa18.28■□□□□ 0.52
SMARCD1-203ENST00000547247 CADM3Q8N126 398 aa18.28■□□□□ 0.52
SMARCD1-203ENST00000547247 WNT10AQ9GZT5 417 aa18.28■□□□□ 0.52
SMARCD1-203ENST00000547247 PARP11Q9NR21 331 aa18.28■□□□□ 0.52
SMARCD1-203ENST00000547247 LINC00527Q9UJ94 153 aa18.28■□□□□ 0.52
SMARCD1-203ENST00000547247 ATP6V0E1O15342 81 aa18.27■□□□□ 0.52
SMARCD1-203ENST00000547247 IGF1P05019 195 aa18.27■□□□□ 0.52
SMARCD1-203ENST00000547247 IL6RP08887 468 aaPredicted RBP18.27■□□□□ 0.52
SMARCD1-203ENST00000547247 NDPQ00604 133 aa18.27■□□□□ 0.52
SMARCD1-203ENST00000547247 TNXAQ16473 311 aa18.27■□□□□ 0.52
SMARCD1-203ENST00000547247 ARPC1AQ92747 370 aa18.27■□□□□ 0.52
SMARCD1-203ENST00000547247 NOL4LQ96MY1 436 aaPredicted RBP18.27■□□□□ 0.52
SMARCD1-203ENST00000547247 NUDT15Q9NV35 164 aa18.27■□□□□ 0.52
SMARCD1-203ENST00000547247 TRAV6A0A075B6T7 132 aa18.26■□□□□ 0.51
SMARCD1-203ENST00000547247 AKR1C2P52895 323 aa18.26■□□□□ 0.51
SMARCD1-203ENST00000547247 RPL8P62917 257 aaKnown RBP18.26■□□□□ 0.51
SMARCD1-203ENST00000547247 SSBP2P81877 361 aaPredicted RBP18.26■□□□□ 0.51
SMARCD1-203ENST00000547247 PPP1R1AQ13522 171 aa18.26■□□□□ 0.51
SMARCD1-203ENST00000547247 C12orf54Q6X4T0 127 aa18.26■□□□□ 0.51
SMARCD1-203ENST00000547247 H2BFWTQ7Z2G1 175 aa18.26■□□□□ 0.51
SMARCD1-203ENST00000547247 ZNF695Q8IW36 515 aa18.26■□□□□ 0.51
SMARCD1-203ENST00000547247 STPG2Q8N412 459 aa18.26■□□□□ 0.51
SMARCD1-203ENST00000547247 KLHDC1Q8N7A1 406 aa18.26■□□□□ 0.51
SMARCD1-203ENST00000547247 ABHD5Q8WTS1 349 aa18.26■□□□□ 0.51
SMARCD1-203ENST00000547247 CHPT1Q8WUD6 406 aa18.26■□□□□ 0.51
SMARCD1-203ENST00000547247 RBPMSQ93062 196 aaKnown RBP18.26■□□□□ 0.51
SMARCD1-203ENST00000547247 TMEM56Q96MV1 263 aa18.26■□□□□ 0.51
SMARCD1-203ENST00000547247 NUBP2Q9Y5Y2 271 aa18.26■□□□□ 0.51
SMARCD1-203ENST00000547247 TMEM56-RWDD3S4R434 201 aa18.26■□□□□ 0.51
SMARCD1-203ENST00000547247 TNCP24821 2201 aa18.26■□□□□ 0.51
SMARCD1-203ENST00000547247 UPK2O00526 184 aa18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 ANXA7P20073 488 aaKnown RBP18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 MAS1LP35410 378 aa18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 NRARPQ7Z6K4 114 aa18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 CENPVQ7Z7K6 275 aaPredicted RBP18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 DUSP18Q8NEJ0 188 aa18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 GON7Q9BXV9 100 aa18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 PALMDQ9NP74 551 aa18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 ZNF580Q9UK33 172 aa18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 DNHD1Q96M86 4753 aa18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 TRAV3A0A0B4J244 114 aa18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 SFT2D2O95562 160 aa18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 OR4E1P0C645 316 aa18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 SRPXP78539 464 aa18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 TMEM268Q5VZI3 342 aa18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 SELENOHQ8IZQ5 122 aaKnown RBP18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 GRPEL2Q8TAA5 225 aa18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 LHFPL5Q8TAF8 219 aa18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 IL22RA2Q969J5 263 aa18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 RRNAD1Q96FB5 475 aaKnown RBP18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 ALX4Q9H161 411 aaPredicted RBP18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 FBXO7Q9Y3I1 522 aa18.25■□□□□ 0.51
SMARCD1-203ENST00000547247 SNAPC5O75971 98 aa18.24■□□□□ 0.51
SMARCD1-203ENST00000547247 H2AFB2P0C5Z0 115 aa18.24■□□□□ 0.51
SMARCD1-203ENST00000547247 VDAC1P21796 283 aa18.24■□□□□ 0.51
SMARCD1-203ENST00000547247 LGI3Q8N145 548 aa18.24■□□□□ 0.51
SMARCD1-203ENST00000547247 SGMS2Q8NHU3 365 aa18.24■□□□□ 0.51
SMARCD1-203ENST00000547247 FAM103A1Q9BTL3 118 aaKnown RBP18.24■□□□□ 0.51
SMARCD1-203ENST00000547247 PRR13Q9NZ81 148 aa18.24■□□□□ 0.51
SMARCD1-203ENST00000547247 C9orf170A2RU37 121 aa18.23■□□□□ 0.51
SMARCD1-203ENST00000547247 IGKV1-5P01602 117 aa18.23■□□□□ 0.51
SMARCD1-203ENST00000547247 HLA-AP01891 365 aaKnown RBP18.23■□□□□ 0.51
SMARCD1-203ENST00000547247 FGF2P09038 288 aa18.23■□□□□ 0.51
SMARCD1-203ENST00000547247 EGR2P11161 476 aaPredicted RBP18.23■□□□□ 0.51
SMARCD1-203ENST00000547247 HLA-GP17693 338 aa18.23■□□□□ 0.51
SMARCD1-203ENST00000547247 CRIP2P52943 208 aaPredicted RBP18.23■□□□□ 0.51
SMARCD1-203ENST00000547247 TMEM267Q0VDI3 215 aaPredicted RBP18.23■□□□□ 0.51
SMARCD1-203ENST00000547247 C4orf46Q504U0 113 aa18.23■□□□□ 0.51
SMARCD1-203ENST00000547247 RNASE11Q8TAA1 199 aaKnown RBP18.23■□□□□ 0.51
SMARCD1-203ENST00000547247 CASTOR1Q8WTX7 329 aa18.23■□□□□ 0.51
SMARCD1-203ENST00000547247 WFDC12Q8WWY7 111 aa18.23■□□□□ 0.51
SMARCD1-203ENST00000547247 SRSF12Q8WXF0 261 aaKnown RBP18.23■□□□□ 0.51
SMARCD1-203ENST00000547247 WSB1Q9Y6I7 421 aa18.23■□□□□ 0.51
SMARCD1-203ENST00000547247 PIGBOS1A0A0B4J2F0 54 aa18.22■□□□□ 0.51
SMARCD1-203ENST00000547247 PSMB11A5LHX3 300 aa18.22■□□□□ 0.51
SMARCD1-203ENST00000547247 OR9G9P0C7N8 305 aa18.22■□□□□ 0.51
SMARCD1-203ENST00000547247 DHRS2Q13268 280 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms