RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 YTHDF2Q9Y5A9 579 aaKnown RBP16.86■□□□□ 0.29
TMEM260-203ENST00000539559 PROP1O75360 226 aa16.85■□□□□ 0.29
TMEM260-203ENST00000539559 TREML4Q6UXN2 200 aa16.85■□□□□ 0.29
TMEM260-203ENST00000539559 C11orf53Q8IXP5 236 aa16.85■□□□□ 0.29
TMEM260-203ENST00000539559 MGST2Q99735 147 aa16.85■□□□□ 0.29
TMEM260-203ENST00000539559 IL17BQ9UHF5 180 aa16.85■□□□□ 0.29
TMEM260-203ENST00000539559 TDGF1P3P51864 188 aa16.85■□□□□ 0.29
TMEM260-203ENST00000539559 PIP4P1Q86T03 277 aa16.85■□□□□ 0.29
TMEM260-203ENST00000539559 Q8TCH9 128 aa16.85■□□□□ 0.29
TMEM260-203ENST00000539559 PCNX2A6NKB5 2137 aa16.85■□□□□ 0.29
TMEM260-203ENST00000539559 SPINK4O60575 86 aa16.84■□□□□ 0.29
TMEM260-203ENST00000539559 AGFG2O95081 481 aa16.84■□□□□ 0.29
TMEM260-203ENST00000539559 NANOS1Q8WY41 292 aaKnown RBP16.84■□□□□ 0.29
TMEM260-203ENST00000539559 HEYLQ9NQ87 328 aaPredicted RBP16.84■□□□□ 0.29
TMEM260-203ENST00000539559 KIR2DL5BA0A0G2JN68 375 aa16.84■□□□□ 0.29
TMEM260-203ENST00000539559 KIR2DL5BA0A0G2JPC4 375 aa16.84■□□□□ 0.29
TMEM260-203ENST00000539559 FOXH1O75593 365 aa16.84■□□□□ 0.29
TMEM260-203ENST00000539559 HPRT1P00492 218 aa16.84■□□□□ 0.29
TMEM260-203ENST00000539559 ZNF90Q03938 601 aa16.84■□□□□ 0.29
TMEM260-203ENST00000539559 FOXL1Q12952 345 aa16.84■□□□□ 0.29
TMEM260-203ENST00000539559 PDLIM3Q53GG5 364 aaPredicted RBP16.84■□□□□ 0.29
TMEM260-203ENST00000539559 KIR2DL5AQ8N109 375 aa16.84■□□□□ 0.29
TMEM260-203ENST00000539559 TAAR6Q96RI8 345 aa16.84■□□□□ 0.29
TMEM260-203ENST00000539559 PARD6AQ9NPB6 346 aa16.84■□□□□ 0.29
TMEM260-203ENST00000539559 PAM16Q9Y3D7 125 aa16.84■□□□□ 0.29
TMEM260-203ENST00000539559 K7EN84 100 aa16.83■□□□□ 0.29
TMEM260-203ENST00000539559 OR10J1P30954 320 aa16.83■□□□□ 0.29
TMEM260-203ENST00000539559 PRAMEF5Q5TYX0 476 aa16.83■□□□□ 0.29
TMEM260-203ENST00000539559 KLF14Q8TD94 323 aaPredicted RBP16.83■□□□□ 0.29
TMEM260-203ENST00000539559 ZCCHC14Q8WYQ9 949 aaKnown RBP16.83■□□□□ 0.29
TMEM260-203ENST00000539559 DIRC2Q96SL1 478 aa16.83■□□□□ 0.29
TMEM260-203ENST00000539559 SERF1AO75920 110 aa16.83■□□□□ 0.28
TMEM260-203ENST00000539559 TIMP3P35625 211 aa16.83■□□□□ 0.28
TMEM260-203ENST00000539559 UTF1Q5T230 341 aa16.83■□□□□ 0.28
TMEM260-203ENST00000539559 OR10G8Q8NGN5 311 aa16.83■□□□□ 0.28
TMEM260-203ENST00000539559 OR5I1Q13606 314 aa16.83■□□□□ 0.28
TMEM260-203ENST00000539559 BATFQ16520 125 aa16.83■□□□□ 0.28
TMEM260-203ENST00000539559 RPL39P5Q59GN2 51 aa16.83■□□□□ 0.28
TMEM260-203ENST00000539559 RNFT1Q5M7Z0 435 aa16.83■□□□□ 0.28
TMEM260-203ENST00000539559 SLC35E4Q6ICL7 350 aa16.83■□□□□ 0.28
TMEM260-203ENST00000539559 HSPB9Q9BQS6 159 aa16.83■□□□□ 0.28
TMEM260-203ENST00000539559 GGTLC1Q9BX51 225 aa16.83■□□□□ 0.28
TMEM260-203ENST00000539559 SEPSECSQ9HD40 501 aaKnown RBP16.83■□□□□ 0.28
TMEM260-203ENST00000539559 PTPRBP23467 1997 aa16.83■□□□□ 0.28
TMEM260-203ENST00000539559 CD99P14209 185 aa16.82■□□□□ 0.28
TMEM260-203ENST00000539559 RAB4AP20338 218 aa16.82■□□□□ 0.28
TMEM260-203ENST00000539559 ARG2P78540 354 aa16.82■□□□□ 0.28
TMEM260-203ENST00000539559 FER1L6-AS2Q96M78 137 aa16.82■□□□□ 0.28
TMEM260-203ENST00000539559 SPRR3Q9UBC9 169 aa16.82■□□□□ 0.28
TMEM260-203ENST00000539559 TMEM210A6NLX4 147 aa16.82■□□□□ 0.28
TMEM260-203ENST00000539559 UBE2NP61088 152 aaKnown RBP16.82■□□□□ 0.28
TMEM260-203ENST00000539559 RPL31P62899 125 aaKnown RBP16.82■□□□□ 0.28
TMEM260-203ENST00000539559 ACP7Q6ZNF0 438 aa16.82■□□□□ 0.28
TMEM260-203ENST00000539559 HES4Q9HCC6 221 aa16.82■□□□□ 0.28
TMEM260-203ENST00000539559 TMEM106BQ9NUM4 274 aa16.82■□□□□ 0.28
TMEM260-203ENST00000539559 RNF114Q9Y508 228 aa16.82■□□□□ 0.28
TMEM260-203ENST00000539559 IGHV1-2P23083 117 aa16.81■□□□□ 0.28
TMEM260-203ENST00000539559 KRTCAP3Q53RY4 240 aa16.81■□□□□ 0.28
TMEM260-203ENST00000539559 DEFB124Q8NES8 71 aa16.81■□□□□ 0.28
TMEM260-203ENST00000539559 VN1R17PQ8TDU5 208 aa16.81■□□□□ 0.28
TMEM260-203ENST00000539559 MRPL18Q9H0U6 180 aaKnown RBP16.81■□□□□ 0.28
TMEM260-203ENST00000539559 IRF2P14316 349 aa16.81■□□□□ 0.28
TMEM260-203ENST00000539559 IER3P46695 156 aa16.81■□□□□ 0.28
TMEM260-203ENST00000539559 FABP6P51161 128 aa16.81■□□□□ 0.28
TMEM260-203ENST00000539559 ATP1A1-AS1Q5TC04 95 aa16.81■□□□□ 0.28
TMEM260-203ENST00000539559 OR4A16Q8NH70 328 aa16.81■□□□□ 0.28
TMEM260-203ENST00000539559 C1orf159Q96HA4 380 aa16.81■□□□□ 0.28
TMEM260-203ENST00000539559 STAG3L2P0CL84 134 aa16.8■□□□□ 0.28
TMEM260-203ENST00000539559 STAG3L3P0CL85 134 aa16.8■□□□□ 0.28
TMEM260-203ENST00000539559 GPR12P47775 334 aa16.8■□□□□ 0.28
TMEM260-203ENST00000539559 SLC35B1P78383 322 aa16.8■□□□□ 0.28
TMEM260-203ENST00000539559 LEAP2Q969E1 77 aa16.8■□□□□ 0.28
TMEM260-203ENST00000539559 FAM103A1Q9BTL3 118 aaKnown RBP16.8■□□□□ 0.28
TMEM260-203ENST00000539559 IQCF6A8MYZ5 107 aa16.8■□□□□ 0.28
TMEM260-203ENST00000539559 M0R1X1 148 aa16.8■□□□□ 0.28
TMEM260-203ENST00000539559 WDR82Q6UXN9 313 aa16.8■□□□□ 0.28
TMEM260-203ENST00000539559 FAM122AQ96E09 287 aa16.8■□□□□ 0.28
TMEM260-203ENST00000539559 WISP2O76076 250 aa16.79■□□□□ 0.28
TMEM260-203ENST00000539559 ACTL6BO94805 426 aa16.79■□□□□ 0.28
TMEM260-203ENST00000539559 SP1P08047 785 aa16.79■□□□□ 0.28
TMEM260-203ENST00000539559 MYOD1P15172 320 aa16.79■□□□□ 0.28
TMEM260-203ENST00000539559 CRISP2P16562 243 aa16.79■□□□□ 0.28
TMEM260-203ENST00000539559 DUTP33316 252 aaKnown RBP16.79■□□□□ 0.28
TMEM260-203ENST00000539559 MRPL49Q13405 166 aaKnown RBP16.79■□□□□ 0.28
TMEM260-203ENST00000539559 ASPHD1Q5U4P2 390 aa16.79■□□□□ 0.28
TMEM260-203ENST00000539559 HSD17B10Q99714 261 aaKnown RBP16.79■□□□□ 0.28
TMEM260-203ENST00000539559 FTH1P19P0C7X4 201 aa16.79■□□□□ 0.28
TMEM260-203ENST00000539559 YPEL3P61236 119 aaPredicted RBP16.79■□□□□ 0.28
TMEM260-203ENST00000539559 TPTE2P1Q5T6R2 138 aa16.79■□□□□ 0.28
TMEM260-203ENST00000539559 OR1L6Q8NGR2 347 aa16.79■□□□□ 0.28
TMEM260-203ENST00000539559 RAB1CQ92928 201 aa16.79■□□□□ 0.28
TMEM260-203ENST00000539559 GNG12Q9UBI6 72 aa16.79■□□□□ 0.28
TMEM260-203ENST00000539559 CFAP47Q6ZTR5 3102 aa16.79■□□□□ 0.28
TMEM260-203ENST00000539559 YPEL1O60688 119 aa16.78■□□□□ 0.28
TMEM260-203ENST00000539559 OPRK1P41145 380 aa16.78■□□□□ 0.28
TMEM260-203ENST00000539559 KIAA1644Q3SXP7 199 aa16.78■□□□□ 0.28
TMEM260-203ENST00000539559 BAGE3Q86Y29 109 aa16.78■□□□□ 0.28
TMEM260-203ENST00000539559 BAGE2Q86Y30 109 aa16.78■□□□□ 0.28
TMEM260-203ENST00000539559 CD177Q8N6Q3 437 aa16.78■□□□□ 0.28
TMEM260-203ENST00000539559 YPEL2Q96QA6 119 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms