RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 A0A1W2PPV4 95 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 TMEM72A0PK05 275 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 ODF3BA8MYP8 253 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 XRCC2O43543 280 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 SCN2BO60939 215 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 CSTAP01040 98 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 IGHG2P01859 326 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 HLA-DPB1P04440 258 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 BCHEP06276 602 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 MMP7P09237 267 aaPredicted RBP2.3□□□□□ -2.04
CD44-235ENST00000532339 CD3GP09693 182 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 PGA4P0DJD7 388 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 PGA3P0DJD8 388 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 RPS4Y1P22090 263 aaKnown RBP2.3□□□□□ -2.04
CD44-235ENST00000532339 PSMB8P28062 276 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 BRS3P32247 399 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 CSNK1A1P48729 337 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 RAB7AP51149 207 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 POLR2HP52434 150 aaKnown RBP2.3□□□□□ -2.04
CD44-235ENST00000532339 DEFB135Q30KP9 77 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 GCSAMLQ5JQS6 135 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 LDLRAD2Q5SZI1 272 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 MINOS1Q5TGZ0 78 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 TEX36Q5VZQ5 186 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 METTL21CQ5VZV1 264 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 C8orf74Q6P047 294 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 ASCL4Q6XD76 172 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 CBR4Q8N4T8 237 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 FAM216BQ8N7L0 139 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 OR8G5Q8NG78 346 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 OR10W1Q8NGF6 305 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 OR6N1Q8NGY5 312 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 ISOC2Q96AB3 205 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 CMBLQ96DG6 245 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 CCL13Q99616 98 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 UQCC2Q9BRT2 126 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 SLC25A39Q9BZJ4 359 aaPredicted RBP2.3□□□□□ -2.04
CD44-235ENST00000532339 MCUBQ9NWR8 336 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 HILPDAQ9Y5L2 63 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 MINOS1-NBL1R4GNA1 71 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 HSPE1-MOB4S4R3N1 261 aa2.3□□□□□ -2.04
CD44-235ENST00000532339 TRAV6A0A075B6T7 132 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 NBDYA0A0U1RRE5 68 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 LOC102725191A0A1B0GVB3 256 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 MPDU1O75352 247 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 HSBP1O75506 76 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 NDUFB2O95178 105 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 IL3P08700 152 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 CD7P09564 240 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 STAG3L2P0CL84 134 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 MUC1P15941 1255 aaPredicted RBP2.29□□□□□ -2.04
CD44-235ENST00000532339 RAB3AP20336 220 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 CD24P25063 80 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 PFN2P35080 140 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 CD200P41217 278 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 TGM4P49221 684 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 ERFP50548 548 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 ERCC8Q13216 396 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 PABPC1L2AQ5JQF8 200 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 Q6P435 159 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 WDR82Q6UXN9 313 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 LRRC8AQ8IWT6 810 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 ZNF561Q8N587 486 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 FAM86B1Q8N7N1 296 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 OR11H6Q8NGC7 330 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 OR51L1Q8NGJ5 315 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 OR4A15Q8NGL6 344 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 OR9Q1Q8NGQ5 310 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 OR13D1Q8NGV5 346 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 ZNF596Q8TC21 504 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 CIDECQ96AQ7 238 aaPredicted RBP2.29□□□□□ -2.04
CD44-235ENST00000532339 RCN3Q96D15 328 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 TMEM70Q9BUB7 260 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 TSGA10Q9BZW7 698 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 NAA50Q9GZZ1 169 aaKnown RBP2.29□□□□□ -2.04
CD44-235ENST00000532339 WFDC10AQ9H1F0 79 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 PLEKHA1Q9HB21 404 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 TMEM38BQ9NVV0 291 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 ADA2Q9NZK5 511 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 CHMP5Q9NZZ3 219 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 ACOT9Q9Y305 439 aa2.29□□□□□ -2.04
CD44-235ENST00000532339 IZUMO1RA6ND01 250 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 CLDN24A6NM45 220 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 ANKRD65E5RJM6 399 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 FTCDNL1E5RQL4 147 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 SPOPO43791 374 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 MBP02144 154 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 TFPTP0C1Z6 253 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 CD37P11049 281 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 ZNF823P16415 610 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 IDH2P48735 452 aaKnown RBP2.28□□□□□ -2.04
CD44-235ENST00000532339 CAV3P56539 151 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 ZNF266Q14584 549 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 C5orf64Q2M2E5 130 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 AP1ARQ63HQ0 302 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 OR5AS1Q8N127 324 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 C10orf111Q8N326 155 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 CLDN22Q8N7P3 220 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 C5orf56Q8N8D9 126 aa2.28□□□□□ -2.04
CD44-235ENST00000532339 FBXO36Q8NEA4 188 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms