RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 DUXBA0A1W2PPF3 345 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 A0A1W2PPI3 338 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 A0A1W2PRD5 423 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 A0A1W2PRF3 423 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 A0A1W2PRM7 423 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 LY86O95711 162 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 HRASP01112 189 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 APOA2P02652 100 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 OR5AC1P0C628 307 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 NQO2P16083 231 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 VDAC1P21796 283 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 REG1BP48304 166 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 CBX3Q13185 183 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 BRD3OSQ6XYD6 125 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 ZNF695Q8IW36 515 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 SELENOHQ8IZQ5 122 aaKnown RBP5.93□□□□□ -1.46
CD44-228ENST00000528455 DYNAPQ8N1N2 210 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 OR8H1Q8NGG4 311 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 OR2T10Q8NGZ9 312 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 OR51H1Q8NH63 302 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 OR4S2Q8NH73 311 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 OSR1Q8TAX0 266 aaPredicted RBP5.93□□□□□ -1.46
CD44-228ENST00000528455 TMEM158Q8WZ71 300 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 LSM10Q969L4 123 aaKnown RBP5.93□□□□□ -1.46
CD44-228ENST00000528455 GPHA2Q96T91 129 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 MRPL20Q9BYC9 149 aaKnown RBP5.93□□□□□ -1.46
CD44-228ENST00000528455 OR51J1Q9H342 316 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 BEX1Q9HBH7 125 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 SLC35D1Q9NTN3 355 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 COMMD9Q9P000 198 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 TMED3Q9Y3Q3 217 aa5.93□□□□□ -1.46
CD44-228ENST00000528455 A0A0U1RQK1 487 aa5.92□□□□□ -1.46
CD44-228ENST00000528455 H7C2Y5 167 aa5.92□□□□□ -1.46
CD44-228ENST00000528455 TIMM23O14925 209 aa5.92□□□□□ -1.46
CD44-228ENST00000528455 RAMP3O60896 148 aa5.92□□□□□ -1.46
CD44-228ENST00000528455 FCGR3BO75015 233 aa5.92□□□□□ -1.46
CD44-228ENST00000528455 MOSP00540 346 aa5.92□□□□□ -1.46
CD44-228ENST00000528455 IL6RP08887 468 aaPredicted RBP5.92□□□□□ -1.46
CD44-228ENST00000528455 RPS16P62249 146 aaKnown RBP5.92□□□□□ -1.46
CD44-228ENST00000528455 SLC9A3R2Q15599 337 aa5.92□□□□□ -1.46
CD44-228ENST00000528455 POU2AF1Q16633 256 aa5.92□□□□□ -1.46
CD44-228ENST00000528455 ANKRD55Q3KP44 614 aa5.92□□□□□ -1.46
CD44-228ENST00000528455 Q6YL49 198 aa5.92□□□□□ -1.46
CD44-228ENST00000528455 FAM219AQ8IW50 185 aa5.92□□□□□ -1.46
CD44-228ENST00000528455 NPBQ8NG41 125 aa5.92□□□□□ -1.46
CD44-228ENST00000528455 OR52B4Q8NGK2 314 aa5.92□□□□□ -1.46
CD44-228ENST00000528455 PIFOQ8TCI5 191 aa5.92□□□□□ -1.46
CD44-228ENST00000528455 CASTOR1Q8WTX7 329 aa5.92□□□□□ -1.46
CD44-228ENST00000528455 C17orf50Q8WW18 174 aa5.92□□□□□ -1.46
CD44-228ENST00000528455 RBPMSQ93062 196 aaKnown RBP5.92□□□□□ -1.46
CD44-228ENST00000528455 SSX3Q99909 188 aa5.92□□□□□ -1.46
CD44-228ENST00000528455 SEC22CQ9BRL7 303 aa5.92□□□□□ -1.46
CD44-228ENST00000528455 RAB18Q9NP72 206 aa5.92□□□□□ -1.46
CD44-228ENST00000528455 CACFD1Q9UGQ2 172 aa5.92□□□□□ -1.46
CD44-228ENST00000528455 ALG5Q9Y673 324 aa5.92□□□□□ -1.46
CD44-228ENST00000528455 IGHV3OR16-10A0A075B7F0 116 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 A0A0B4J293 547 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 A0A1B0GU03 582 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 HMX3A6NHT5 357 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 VENTXO95231 258 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 CRYZL1O95825 349 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 KRASP01116 189 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 IFNA21P01568 189 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 IGKV1-39P01597 117 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 IGKV1-16P04430 117 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 IGKV1D-39P04432 117 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 FGF2P09038 288 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 SLC25A6P12236 298 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 SRP14P37108 136 aaKnown RBP5.91□□□□□ -1.46
CD44-228ENST00000528455 IER3P46695 156 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 CYCSP99999 105 aaKnown RBP5.91□□□□□ -1.46
CD44-228ENST00000528455 LRRC75BQ2VPJ9 315 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 DEFB112Q30KQ8 113 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 TMEM268Q5VZI3 342 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 RUSC1-AS1Q66K80 236 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 LIN54Q6MZP7 749 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 IL17RELQ6ZVW7 336 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 LYZL2Q7Z4W2 148 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 Q8N6K4 173 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 TEX45Q8NA69 505 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 UXS1Q8NBZ7 420 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 VSTM2AQ8TAG5 236 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 R3HDM4Q96D70 268 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 RRNAD1Q96FB5 475 aaKnown RBP5.91□□□□□ -1.46
CD44-228ENST00000528455 SEC22AQ96IW7 307 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 TSNAXQ99598 290 aaKnown RBP5.91□□□□□ -1.46
CD44-228ENST00000528455 MED28Q9H204 178 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 PLSCR3Q9NRY6 295 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 FKBP11Q9NYL4 201 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 C1RLQ9NZP8 487 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 PITPNC1Q9UKF7 332 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 MMP24Q9Y5R2 645 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 STAB1Q9NY15 2570 aa5.91□□□□□ -1.46
CD44-228ENST00000528455 SRRM4A7MD48 611 aaKnown RBP5.9□□□□□ -1.46
CD44-228ENST00000528455 SSNA1O43805 119 aa5.9□□□□□ -1.46
CD44-228ENST00000528455 OR2A4O95047 310 aa5.9□□□□□ -1.46
CD44-228ENST00000528455 S1PR2O95136 353 aa5.9□□□□□ -1.46
CD44-228ENST00000528455 IGKV1D-33P01593 117 aa5.9□□□□□ -1.46
CD44-228ENST00000528455 IGKV1-33P01594 117 aa5.9□□□□□ -1.46
CD44-228ENST00000528455 CRYGBP07316 175 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms