RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 PCSK4Q6UW60 755 aa7.08□□□□□ -1.28
LIMCH1-216ENST00000512820 TMEM108Q6UXF1 575 aa7.08□□□□□ -1.28
LIMCH1-216ENST00000512820 GCSAMQ8N6F7 178 aa7.08□□□□□ -1.28
LIMCH1-216ENST00000512820 OR4B1Q8NGF8 309 aa7.08□□□□□ -1.28
LIMCH1-216ENST00000512820 ITLN1Q8WWA0 313 aa7.08□□□□□ -1.28
LIMCH1-216ENST00000512820 NDUFAF3Q9BU61 184 aa7.08□□□□□ -1.28
LIMCH1-216ENST00000512820 MS4A5Q9H3V2 200 aa7.08□□□□□ -1.28
LIMCH1-216ENST00000512820 FANCMQ8IYD8 2048 aa7.08□□□□□ -1.28
LIMCH1-216ENST00000512820 P01737 135 aa7.08□□□□□ -1.28
LIMCH1-216ENST00000512820 AMBPP02760 352 aa7.08□□□□□ -1.28
LIMCH1-216ENST00000512820 C1QTNF9P0C862 333 aa7.08□□□□□ -1.28
LIMCH1-216ENST00000512820 HIST1H1EP10412 219 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-216ENST00000512820 NUBP1P53384 320 aa7.08□□□□□ -1.28
LIMCH1-216ENST00000512820 ATP1A1-AS1Q5TC04 95 aa7.08□□□□□ -1.28
LIMCH1-216ENST00000512820 CYYR1Q96J86 154 aa7.08□□□□□ -1.28
LIMCH1-216ENST00000512820 HLA-DQA1P01909 254 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 CRYABP02511 175 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 LYZP61626 148 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 TNXAQ16473 311 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 SPATA45Q537H7 98 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 Q6ZRM9 215 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 Q6ZS49 121 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 C1orf174Q8IYL3 243 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 HS3ST6Q96QI5 342 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 IGKV3D-15A0A087WSY6 115 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 IFNL4K9M1U5 179 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 CSN3P07498 182 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 LGALS4P56470 323 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 B3GALT5-AS1P59052 145 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 ZFP36L1Q07352 338 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 FAM90A2PQ658T7 463 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 NABP2Q9BQ15 211 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 HSPB7Q9UBY9 170 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 PTPRZ1P23471 2315 aaPredicted RBP7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 NDUFS6O75380 124 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 TMEM50AO95807 157 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 IGHV2-5P01817 119 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 LINC00869P0C866 280 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 SRIP30626 198 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 CENPWQ5EE01 88 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 NHLRC2Q8NBF2 726 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 DEFB124Q8NES8 71 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 SEBOXQ9HB31 216 aaPredicted RBP7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 HIF1ANQ9NWT6 349 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 LRRK1Q38SD2 2015 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 TMEM265A0A087WTH1 108 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 PRR33A8MZF0 331 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 ISLRO14498 428 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 RRHO14718 337 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 CA2P00918 260 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 GCSAMLQ5JQS6 135 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 DOLPP1Q86YN1 238 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 ZNRF1Q8ND25 227 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 OR4F17Q8NGA8 305 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 PRSS3P2Q8NHM4 247 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 PERPQ96FX8 193 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 IL36BQ9NZH7 164 aa7.07□□□□□ -1.28
LIMCH1-216ENST00000512820 TCF21O43680 179 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 C8orf88P0DMB2 117 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 TMEM11P17152 192 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 Q6ZT83 130 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 TCF23Q7RTU1 214 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 STXBP6Q8NFX7 210 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 PGPEP1LA6NFU8 196 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 CGAP01215 116 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 TFF1P04155 84 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 C20orf204Q6ZNR8 217 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 LURAP1LQ8IV03 231 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 ZCCHC14Q8WYQ9 949 aaKnown RBP7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 TMEM191AQ9H0A3 160 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 IGKV1-6A0A0C4DH72 117 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 FOXI3A8MTJ6 420 aaPredicted RBP7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 IQCF6A8MYZ5 107 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 NKX2-8O15522 239 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 IGLV3-1P01715 115 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 AMY1AP04745 511 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 APELAP0DMC3 54 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 COL8A1P27658 744 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 GFRA1P56159 465 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 ARL16Q0P5N6 197 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 WDR31Q8NA23 367 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 LYPD6BQ8NI32 183 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 ZNF596Q8TC21 504 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 RPEQ96AT9 228 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 SFXN3Q9BWM7 321 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 GP6Q9HCN6 339 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 TRBV9A0A0B4J1U6 114 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 LILRA1O75019 489 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 PLAUP00749 431 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 CD99P14209 185 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 GPX4P36969 197 aaPredicted RBP7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 ZNF137PP52743 207 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 CCL8P80075 99 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 C11orf42Q8N5U0 333 aa7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 GSX1Q9H4S2 264 aaPredicted RBP7.06□□□□□ -1.28
LIMCH1-216ENST00000512820 CBY3A6NI87 242 aa7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 ACP1P24666 158 aa7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 TMEM14EPQ6UXP3 125 aa7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 SLC25A10Q9UBX3 287 aaPredicted RBP7.05□□□□□ -1.28
LIMCH1-216ENST00000512820 UQCR10Q9UDW1 63 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms