RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 TMEM187Q14656 261 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 TNXAQ16473 311 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 PRSS8Q16651 343 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 TMEM268Q5VZI3 342 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 ZNF695Q8IW36 515 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 PUSL1Q8N0Z8 303 aaKnown RBP9.41□□□□□ -0.9
CUX1-210ENST00000497815 Q8N2B8 174 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 RNASE11Q8TAA1 199 aaKnown RBP9.41□□□□□ -0.9
CUX1-210ENST00000497815 GRPEL2Q8TAA5 225 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 LHFPL5Q8TAF8 219 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 VSTM2AQ8TAG5 236 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 GLYATL2Q8WU03 294 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 GALNT14Q96FL9 552 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 NOL4LQ96MY1 436 aaPredicted RBP9.41□□□□□ -0.9
CUX1-210ENST00000497815 C16orf95Q9H693 158 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 ZNF430Q9H8G1 570 aaPredicted RBP9.41□□□□□ -0.9
CUX1-210ENST00000497815 NUBP2Q9Y5Y2 271 aa9.41□□□□□ -0.9
CUX1-210ENST00000497815 JMJD1CQ15652 2540 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 TMEM89A2RUT3 159 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 CLPSL1A2RUU4 121 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 KCNAB3O43448 404 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 SFT2D2O95562 160 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 CDS2O95674 445 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 IGKV1-5P01602 117 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 IGHG2P01859 326 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 HLA-AP01891 365 aaKnown RBP9.4□□□□□ -0.9
CUX1-210ENST00000497815 OPN1MWP04001 364 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 OPN1MW2P0DN77 364 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 OPN1MW3P0DN78 364 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 SPNP16150 400 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 FOXL1Q12952 345 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 FXYD3Q14802 87 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 POU2AF1Q16633 256 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 IZUMO4Q1ZYL8 232 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 MRGPRG-AS1Q2M3A8 158 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 H2BFWTQ7Z2G1 175 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 FOXRED2Q8IWF2 684 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 MMD2Q8IY49 270 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 SELENOHQ8IZQ5 122 aaKnown RBP9.4□□□□□ -0.9
CUX1-210ENST00000497815 OR52B4Q8NGK2 314 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 TMEM167AQ8TBQ9 72 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 SEC22AQ96IW7 307 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 FAM103A1Q9BTL3 118 aaKnown RBP9.4□□□□□ -0.9
CUX1-210ENST00000497815 OR51J1Q9H342 316 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 PALMDQ9NP74 551 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 SERTAD4Q9NUC0 356 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 NSG2Q9Y328 171 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 RNF114Q9Y508 228 aa9.4□□□□□ -0.9
CUX1-210ENST00000497815 C9orf170A2RU37 121 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 UPK2O00526 184 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 ATP6V0E1O15342 81 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 CREBL2O60519 120 aaPredicted RBP9.39□□□□□ -0.91
CUX1-210ENST00000497815 ACTL6BO94805 426 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 ATG12O94817 140 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 OR9G9P0C7N8 305 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 MYOD1P15172 320 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 OR2B8PP59922 312 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 UBE2MP61081 183 aaKnown RBP9.39□□□□□ -0.91
CUX1-210ENST00000497815 RPL8P62917 257 aaKnown RBP9.39□□□□□ -0.91
CUX1-210ENST00000497815 SSBP2P81877 361 aaPredicted RBP9.39□□□□□ -0.91
CUX1-210ENST00000497815 NDPQ00604 133 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 DHRS2Q13268 280 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 ANKRD55Q3KP44 614 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 AWAT1Q58HT5 328 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 C10orf55Q5SWW7 151 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 PLET1Q6UQ28 207 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 ZNF562Q6V9R5 426 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 LYG2Q86SG7 212 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 SLC35G3Q8N808 338 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 ARPC1AQ92747 370 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 RBPMSQ93062 196 aaKnown RBP9.39□□□□□ -0.91
CUX1-210ENST00000497815 RRNAD1Q96FB5 475 aaKnown RBP9.39□□□□□ -0.91
CUX1-210ENST00000497815 TMEM56Q96MV1 263 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 MDFIQ99750 246 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 BET1LQ9NYM9 111 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 FBXO7Q9Y3I1 522 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 WSB1Q9Y6I7 421 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 TMEM56-RWDD3S4R434 201 aa9.39□□□□□ -0.91
CUX1-210ENST00000497815 A0A0G2JRQ6 117 aa9.38□□□□□ -0.91
CUX1-210ENST00000497815 AP4M1O00189 453 aa9.38□□□□□ -0.91
CUX1-210ENST00000497815 RBMXL2O75526 392 aaKnown RBP9.38□□□□□ -0.91
CUX1-210ENST00000497815 SNAPC5O75971 98 aa9.38□□□□□ -0.91
CUX1-210ENST00000497815 APELAP0DMC3 54 aa9.38□□□□□ -0.91
CUX1-210ENST00000497815 HLA-GP17693 338 aa9.38□□□□□ -0.91
CUX1-210ENST00000497815 SRPXP78539 464 aa9.38□□□□□ -0.91
CUX1-210ENST00000497815 ECSCRQ19T08 205 aa9.38□□□□□ -0.91
CUX1-210ENST00000497815 LYZL2Q7Z4W2 148 aa9.38□□□□□ -0.91
CUX1-210ENST00000497815 CENPVQ7Z7K6 275 aaPredicted RBP9.38□□□□□ -0.91
CUX1-210ENST00000497815 LGI3Q8N145 548 aa9.38□□□□□ -0.91
CUX1-210ENST00000497815 KLHDC1Q8N7A1 406 aa9.38□□□□□ -0.91
CUX1-210ENST00000497815 DUSP18Q8NEJ0 188 aa9.38□□□□□ -0.91
CUX1-210ENST00000497815 OR4A5Q8NH83 315 aa9.38□□□□□ -0.91
CUX1-210ENST00000497815 FYTTD1Q96QD9 318 aaKnown RBP9.38□□□□□ -0.91
CUX1-210ENST00000497815 PHB2Q99623 299 aa9.38□□□□□ -0.91
CUX1-210ENST00000497815 SEC22CQ9BRL7 303 aa9.38□□□□□ -0.91
CUX1-210ENST00000497815 TRAV41A0A0B4J266 112 aa9.37□□□□□ -0.91
CUX1-210ENST00000497815 A0A1B0GUS0 222 aa9.37□□□□□ -0.91
CUX1-210ENST00000497815 MSGN1A6NI15 193 aa9.37□□□□□ -0.91
CUX1-210ENST00000497815 INMT-MINDY4F8WBC2 141 aa9.37□□□□□ -0.91
CUX1-210ENST00000497815 G3V318 75 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms