RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, human

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD3-208	ENST00000497026	CDH20	Q9HBT6	801 aa		4.08	□□□□□ -1.76
CSMD3-208	ENST00000497026	GSKIP	Q9P0R6	139 aa		4.08	□□□□□ -1.76
CSMD3-208	ENST00000497026	B9D1	Q9UPM9	204 aa		4.08	□□□□□ -1.76
CSMD3-208	ENST00000497026	LHFPL6	Q9Y693	200 aa		4.08	□□□□□ -1.76
CSMD3-208	ENST00000497026	ABCA1	O95477	2261 aa		4.08	□□□□□ -1.76
CSMD3-208	ENST00000497026	ZFHX3	Q15911	3703 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	CSPG4	Q6UVK1	2322 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	TRBV5-7	A0A0A0MS05	114 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	C5orf49	A4QMS7	147 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	OR6C6	A6NF89	314 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	RBFOX3	A6NFN3	312 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026		E5RGE8	158 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	LYNX1	G3V0Z9	82 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	RER1	O15258	196 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	SYNGR3	O43761	229 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	GPR137B	O60478	399 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	IFNA1	P01562	189 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	CSN2	P05814	226 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	ERCC1	P07992	297 aa	Predicted RBP	4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	PGA5	P0DJD9	388 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	LYNX1	P0DP58	116 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	SERPINA2	P20848	420 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	CCNO	P22674	350 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	RBMX	P38159	391 aa	Known RBP	4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	PSMB10	P40306	273 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	NAA10	P41227	235 aa	Predicted RBP	4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	RPS27	P42677	84 aa	Known RBP	4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	NPY4R	P50391	375 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	PDLIM4	P50479	330 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	RIPPLY3	P57055	190 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	FAM3B	P58499	235 aa	Predicted RBP	4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	ARF6	P62330	175 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	HLA-DRB3	P79483	266 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	MFGE8	Q08431	387 aa	Predicted RBP	4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	EIF2B1	Q14232	305 aa	Known RBP	4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	ZNF266	Q14584	549 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	RSPO1	Q2MKA7	263 aa	Predicted RBP	4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	ALKBH6	Q3KRA9	238 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	ZNF506	Q5JVG8	444 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	SPATA46	Q5T0L3	261 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	LINC01590	Q5TEZ4	76 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	ZNF343	Q6P1L6	599 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	TEX38	Q6PEX7	206 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	PET117	Q6UWS5	81 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	DPPA3	Q6W0C5	159 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	POC1A	Q8NBT0	407 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	OR4C5	Q8NGB2	326 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	OR4B1	Q8NGF8	309 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	OR52E2	Q8NGJ4	325 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	FAM213B	Q8TBF2	198 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	SLC25A40	Q8TBP6	338 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	RNASE8	Q8TDE3	154 aa	Known RBP	4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	TMEM170A	Q8WVE7	144 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	FAM46B	Q96A09	425 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	PTX4	Q96A99	478 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	FAM3D	Q96BQ1	224 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	MSI2	Q96DH6	328 aa	Known RBP	4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	ZMYND19	Q96E35	227 aa	Predicted RBP	4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	SLC35E1	Q96K37	410 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	FAM71F1	Q96KD3	344 aa	Predicted RBP	4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	TP53RK	Q96S44	253 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	SLC6A7	Q99884	636 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	RNF126	Q9BV68	326 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	NMNAT2	Q9BZQ4	307 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	BPESC1	Q9GZL8	116 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026		Q9N2K0	584 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	DYNLRB1	Q9NP97	96 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	PNRC2	Q9NPJ4	139 aa	Known RBP	4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	DECR2	Q9NUI1	292 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	MRPL22	Q9NWU5	206 aa	Known RBP	4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	C1orf123	Q9NWV4	160 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	PLEK2	Q9NYT0	353 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	RPH3AL	Q9UNE2	315 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	GTF2A1L	Q9UNN4	478 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	NSG2	Q9Y328	171 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	URGCP-MRPS24	S4R325	110 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	MALRD1	Q5VYJ5	2156 aa		4.07	□□□□□ -1.76
CSMD3-208	ENST00000497026	C2CD3	Q4AC94	2353 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	IGHV4-61	A0A0C4DH41	118 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	C17orf100	A8MU93	164 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	TMEM238	C9JI98	176 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	INAFM1	C9JVW0	142 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026		F6UZH7	168 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026		K7ERU9	68 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026		K7N7A8	449 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	DEDD	O75618	318 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	HPRT1	P00492	218 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	REN	P00797	406 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	IGHV3-13	P01766	116 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	MAS1	P04201	325 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	GYPB	P06028	91 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	SRP19	P09132	144 aa	Known RBP	4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	SLC25A16	P16260	332 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	DSCR9	P59020	149 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	PCBD1	P61457	104 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	PPP1CB	P62140	327 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	LOXL1	Q08397	574 aa	Predicted RBP	4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	IL24	Q13007	206 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	UBE2V1	Q13404	147 aa		4.06	□□□□□ -1.76
CSMD3-208	ENST00000497026	FAM189A2	Q15884	450 aa		4.06	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms