RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 CD79BP40259 229 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 MAGEA2P43356 314 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 SPCS3P61009 180 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 PSPHP78330 225 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 EMX2Q04743 252 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 IMPG1Q17R60 797 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 KRTAP21-2Q3LI59 83 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 ACTL10Q5JWF8 245 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 LAIR2Q6ISS4 152 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 SLC25A25Q6KCM7 469 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 LYZL2Q7Z4W2 148 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 SNX29P2Q8IUI4 249 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 FAM58AQ8N1B3 248 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 C12orf45Q8N5I9 185 aaPredicted RBP2.07□□□□□ -2.08
USP48-209ENST00000487880 OR8J3Q8NGG0 315 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 OR6K2Q8NGY2 324 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 OR6K3Q8NGY3 331 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 OR2T4Q8NH00 348 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 RNASE11Q8TAA1 199 aaKnown RBP2.07□□□□□ -2.08
USP48-209ENST00000487880 ZNF431Q8TF32 576 aaPredicted RBP2.07□□□□□ -2.08
USP48-209ENST00000487880 SFT2D1Q8WV19 159 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 AP3S1Q92572 193 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 TMBIM1Q969X1 311 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 C19orf60Q96EN9 201 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 PPP1R2P1Q96PQ5 205 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 VAT1Q99536 393 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 GPR22Q99680 433 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 C7orf50Q9BRJ6 194 aaKnown RBP2.07□□□□□ -2.08
USP48-209ENST00000487880 CDCA4Q9BXL8 241 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 REG4Q9BYZ8 158 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 CCDC90BQ9GZT6 254 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 MIXL1Q9H2W2 232 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 CMTM6Q9NX76 183 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 MED11Q9P086 117 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 CCDC167Q9P0B6 97 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 SCP2D1Q9UJQ7 156 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 SAMHD1Q9Y3Z3 626 aaKnown RBP2.07□□□□□ -2.08
USP48-209ENST00000487880 NUBP2Q9Y5Y2 271 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 U3KQK5 164 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 V9GYH0 126 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 DOT1LQ8TEK3 1739 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 LTN1O94822 1766 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 LTBP2Q14767 1821 aa2.07□□□□□ -2.08
USP48-209ENST00000487880 UBR2Q8IWV8 1755 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 RAB19A4D1S5 217 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 TRAPPC13A5PLN9 417 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 FABP12A6NFH5 140 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 HMSDA8MTL9 139 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 ZNF670-ZNF695F2Z2N8 137 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 INMT-MINDY4F8WBC2 141 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 M0R233 179 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 FABP7O15540 132 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 SGCEO43556 437 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 CHP2O43745 196 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 PDYNP01213 254 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 SCGB1C2P0DMR2 95 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 IFI30P13284 250 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 GTF2F2P13984 249 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 UGT2B7P16662 529 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 RPS3P23396 243 aaKnown RBP eCLIP2.06□□□□□ -2.08
USP48-209ENST00000487880 PRTN3P24158 256 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 IL12BP29460 328 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 SDC4P31431 198 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 SDC2P34741 201 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 LGALS7P47929 136 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 GCLMP48507 274 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 ZNF83P51522 516 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 XKP51811 444 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 CCL23P55773 120 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 PPP3R1P63098 170 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 DCDP81605 110 aaKnown RBP2.06□□□□□ -2.08
USP48-209ENST00000487880 TFAMQ00059 246 aaKnown RBP2.06□□□□□ -2.08
USP48-209ENST00000487880 TPBGQ13641 420 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 CDKL4Q5MAI5 379 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 AADACL4Q5VUY2 407 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 FAHD1Q6P587 224 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 MARCH3Q86UD3 253 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 FUNDC1Q8IVP5 155 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 SVBPQ8N300 66 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 OR52K1Q8NGK4 314 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 OR8D4Q8NGM9 314 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 OR9Q1Q8NGQ5 310 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 SCGB1C1Q8TD33 95 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 BLNKQ8WV28 456 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 MAL2Q969L2 176 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 LINC00052Q96N35 136 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 C20orf166-AS1Q96NR2 134 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 RBP7Q96R05 134 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 TAPBPLQ9BX59 468 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 BCL2L14Q9BZR8 327 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 MED28Q9H204 178 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 RNF122Q9H9V4 155 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 C19orf12Q9NSK7 152 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 METTL1Q9UBP6 276 aaKnown RBP2.06□□□□□ -2.08
USP48-209ENST00000487880 C14orf166Q9Y224 244 aaKnown RBP2.06□□□□□ -2.08
USP48-209ENST00000487880 ALG5Q9Y673 324 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 MYH9P35579 1960 aaKnown RBP2.06□□□□□ -2.08
USP48-209ENST00000487880 NHSQ6T4R5 1651 aa2.06□□□□□ -2.08
USP48-209ENST00000487880 RICTORQ6R327 1708 aa2.05□□□□□ -2.08
USP48-209ENST00000487880 MEIKINA0A087WXM9 373 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms