RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-209ENST00000472044 C21orf140B9A014 251 aa1.25□□□□□ -2.21
PTCD3-209ENST00000472044 KLRC4O43908 158 aa1.25□□□□□ -2.21
PTCD3-209ENST00000472044 NAPSAO96009 420 aa1.25□□□□□ -2.21
PTCD3-209ENST00000472044 C1QCP02747 245 aa1.25□□□□□ -2.21
PTCD3-209ENST00000472044 TPI1P60174 286 aa1.25□□□□□ -2.21
PTCD3-209ENST00000472044 TMEM258P61165 79 aa1.25□□□□□ -2.21
PTCD3-209ENST00000472044 TNFAIP6P98066 277 aaPredicted RBP1.25□□□□□ -2.21
PTCD3-209ENST00000472044 BATFQ16520 125 aa1.25□□□□□ -2.21
PTCD3-209ENST00000472044 TMEM42Q69YG0 159 aa1.25□□□□□ -2.21
PTCD3-209ENST00000472044 ZNF550Q7Z398 422 aa1.25□□□□□ -2.21
PTCD3-209ENST00000472044 DYNAPQ8N1N2 210 aa1.25□□□□□ -2.21
PTCD3-209ENST00000472044 SLC22A24Q8N4F4 322 aa1.25□□□□□ -2.21
PTCD3-209ENST00000472044 C10orf126Q8N4M7 172 aa1.25□□□□□ -2.21
PTCD3-209ENST00000472044 DEFB119Q8N690 84 aa1.25□□□□□ -2.21
PTCD3-209ENST00000472044 OTUD6BQ8N6M0 293 aa1.25□□□□□ -2.21
PTCD3-209ENST00000472044 SLC7A6Q92536 515 aa1.25□□□□□ -2.21
PTCD3-209ENST00000472044 GPR84Q9NQS5 396 aa1.25□□□□□ -2.21
PTCD3-209ENST00000472044 FGFR1OP2Q9NVK5 253 aa1.25□□□□□ -2.21
PTCD3-209ENST00000472044 FKBP14Q9NWM8 211 aa1.25□□□□□ -2.21
PTCD3-209ENST00000472044 DOK5Q9P104 306 aa1.25□□□□□ -2.21
PTCD3-209ENST00000472044 PCDH15Q96QU1 1955 aa1.25□□□□□ -2.21
PTCD3-209ENST00000472044 C9orf84Q5VXU9 1444 aa1.24□□□□□ -2.21
PTCD3-209ENST00000472044 RP1L1Q8IWN7 2480 aaPredicted RBP1.24□□□□□ -2.21
PTCD3-209ENST00000472044 A8MUN3 132 aa1.24□□□□□ -2.21
PTCD3-209ENST00000472044 LRRN3E7EW58 273 aa1.24□□□□□ -2.21
PTCD3-209ENST00000472044 PLA2G10O15496 165 aa1.24□□□□□ -2.21
PTCD3-209ENST00000472044 PGLYRP1O75594 196 aaPredicted RBP1.24□□□□□ -2.21
PTCD3-209ENST00000472044 CCL5P13501 91 aa1.24□□□□□ -2.21
PTCD3-209ENST00000472044 CCR2P41597 374 aa1.24□□□□□ -2.21
PTCD3-209ENST00000472044 POLR2GP62487 172 aaKnown RBP eCLIP1.24□□□□□ -2.21
PTCD3-209ENST00000472044 ACSM3Q53FZ2 586 aa1.24□□□□□ -2.21
PTCD3-209ENST00000472044 TNFAIP8L3Q5GJ75 292 aa1.24□□□□□ -2.21
PTCD3-209ENST00000472044 CLVS2Q5SYC1 327 aa1.24□□□□□ -2.21
PTCD3-209ENST00000472044 C1orf195Q5TG92 126 aa1.24□□□□□ -2.21
PTCD3-209ENST00000472044 COA5Q86WW8 74 aa1.24□□□□□ -2.21
PTCD3-209ENST00000472044 LRRC28Q86X40 367 aaPredicted RBP1.24□□□□□ -2.21
PTCD3-209ENST00000472044 OR8B12Q8NGG6 310 aa1.24□□□□□ -2.21
PTCD3-209ENST00000472044 DOHHQ9BU89 302 aa1.24□□□□□ -2.21
PTCD3-209ENST00000472044 C8orf4Q9NR00 106 aa1.24□□□□□ -2.21
PTCD3-209ENST00000472044 SMARCA4P51532 1647 aa1.24□□□□□ -2.21
PTCD3-209ENST00000472044 SDK1Q7Z5N4 2213 aa1.24□□□□□ -2.21
PTCD3-209ENST00000472044 RALGAPA2Q2PPJ7 1873 aa1.24□□□□□ -2.21
PTCD3-209ENST00000472044 MAST2Q6P0Q8 1798 aa1.24□□□□□ -2.21
PTCD3-209ENST00000472044 TRGV2A0A075B6R0 118 aa1.23□□□□□ -2.21
PTCD3-209ENST00000472044 TRAV7A0A075B6U4 112 aa1.23□□□□□ -2.21
PTCD3-209ENST00000472044 IGHV1-18A0A0C4DH31 117 aa1.23□□□□□ -2.21
PTCD3-209ENST00000472044 H7C2G1 150 aa1.23□□□□□ -2.21
PTCD3-209ENST00000472044 LST1O00453 97 aa1.23□□□□□ -2.21
PTCD3-209ENST00000472044 CREBL2O60519 120 aaPredicted RBP1.23□□□□□ -2.21
PTCD3-209ENST00000472044 LGALS1P09382 135 aaKnown RBP1.23□□□□□ -2.21
PTCD3-209ENST00000472044 EMX1Q04741 257 aaPredicted RBP1.23□□□□□ -2.21
PTCD3-209ENST00000472044 SLC38A11Q08AI6 406 aa1.23□□□□□ -2.21
PTCD3-209ENST00000472044 RSU1Q15404 277 aa1.23□□□□□ -2.21
PTCD3-209ENST00000472044 CD200R1LQ6Q8B3 271 aa1.23□□□□□ -2.21
PTCD3-209ENST00000472044 HIST2H3AQ71DI3 136 aa1.23□□□□□ -2.21
PTCD3-209ENST00000472044 DEFB125Q8N687 156 aa1.23□□□□□ -2.21
PTCD3-209ENST00000472044 GPR32P1Q8NGA4 272 aa1.23□□□□□ -2.21
PTCD3-209ENST00000472044 RAB8BQ92930 207 aa1.23□□□□□ -2.21
PTCD3-209ENST00000472044 OPTNQ96CV9 577 aa1.23□□□□□ -2.21
PTCD3-209ENST00000472044 IMMP2LQ96T52 175 aa1.23□□□□□ -2.21
PTCD3-209ENST00000472044 CXorf21Q9HAI6 301 aa1.23□□□□□ -2.21
PTCD3-209ENST00000472044 TIMM9Q9Y5J7 89 aa1.23□□□□□ -2.21
PTCD3-209ENST00000472044 PXMP4Q9Y6I8 212 aa1.23□□□□□ -2.21
PTCD3-209ENST00000472044 BRWD1Q9NSI6 2320 aa1.22□□□□□ -2.21
PTCD3-209ENST00000472044 CUL9Q8IWT3 2517 aa1.22□□□□□ -2.21
PTCD3-209ENST00000472044 MEIKINA0A087WXM9 373 aa1.22□□□□□ -2.21
PTCD3-209ENST00000472044 NSA2O95478 260 aaKnown RBP1.22□□□□□ -2.21
PTCD3-209ENST00000472044 SERPINA7P05543 415 aa1.22□□□□□ -2.21
PTCD3-209ENST00000472044 ZNF705DP0CH99 300 aaPredicted RBP1.22□□□□□ -2.21
PTCD3-209ENST00000472044 ZNF705BP0CI00 300 aaPredicted RBP1.22□□□□□ -2.21
PTCD3-209ENST00000472044 UCHL3P15374 230 aa1.22□□□□□ -2.21
PTCD3-209ENST00000472044 RPL28P46779 137 aaKnown RBP1.22□□□□□ -2.21
PTCD3-209ENST00000472044 MARCKSL1P49006 195 aa1.22□□□□□ -2.21
PTCD3-209ENST00000472044 RAB14P61106 215 aa1.22□□□□□ -2.21
PTCD3-209ENST00000472044 MAGOHP61326 146 aaKnown RBP1.22□□□□□ -2.21
PTCD3-209ENST00000472044 NAA20P61599 178 aa1.22□□□□□ -2.21
PTCD3-209ENST00000472044 RPL30P62888 115 aaKnown RBP1.22□□□□□ -2.21
PTCD3-209ENST00000472044 SSX8Q7RTT4 187 aa1.22□□□□□ -2.21
PTCD3-209ENST00000472044 KTN1-AS1Q86SY8 53 aa1.22□□□□□ -2.21
PTCD3-209ENST00000472044 RNF133Q8WVZ7 376 aa1.22□□□□□ -2.21
PTCD3-209ENST00000472044 TESCQ96BS2 214 aa1.22□□□□□ -2.21
PTCD3-209ENST00000472044 ROPN1LQ96C74 230 aa1.22□□□□□ -2.21
PTCD3-209ENST00000472044 DIRAS2Q96HU8 199 aa1.22□□□□□ -2.21
PTCD3-209ENST00000472044 SPZ1Q9BXG8 430 aa1.22□□□□□ -2.21
PTCD3-209ENST00000472044 RSL24D1Q9UHA3 163 aaKnown RBP1.22□□□□□ -2.21
PTCD3-209ENST00000472044 SCAF11Q99590 1463 aaKnown RBP1.22□□□□□ -2.21
PTCD3-209ENST00000472044 FLT4P35916 1363 aa1.21□□□□□ -2.21
PTCD3-209ENST00000472044 HELZ2Q9BYK8 2649 aaKnown RBP1.21□□□□□ -2.22
PTCD3-209ENST00000472044 FREM1Q5H8C1 2179 aa1.21□□□□□ -2.22
PTCD3-209ENST00000472044 TMEM269A0A1B0GVZ9 245 aa1.21□□□□□ -2.22
PTCD3-209ENST00000472044 HMSDA8MTL9 139 aa1.21□□□□□ -2.22
PTCD3-209ENST00000472044 F8W036 122 aa1.21□□□□□ -2.22
PTCD3-209ENST00000472044 ACOX3O15254 700 aa1.21□□□□□ -2.22
PTCD3-209ENST00000472044 ISG15P05161 165 aa1.21□□□□□ -2.22
PTCD3-209ENST00000472044 MSMBP08118 114 aa1.21□□□□□ -2.22
PTCD3-209ENST00000472044 RPS12P25398 132 aaKnown RBP1.21□□□□□ -2.22
PTCD3-209ENST00000472044 MAP2K4P45985 399 aa1.21□□□□□ -2.22
PTCD3-209ENST00000472044 REG1BP48304 166 aa1.21□□□□□ -2.22
PTCD3-209ENST00000472044 AP2S1P53680 142 aaPredicted RBP1.21□□□□□ -2.22
PTCD3-209ENST00000472044 RAB5BP61020 215 aa1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms