RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 SHISA8B8ZZ34 492 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 ORM1P02763 201 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 TEX38Q6PEX7 206 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 DNAJC4Q9NNZ3 241 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 CBY3A6NI87 242 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 LINC01565O15544 149 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 RD3LP0DJH9 198 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 RPL13AP40429 203 aaKnown RBP5.96□□□□□ -1.46
SYNE1-216ENST00000461872 RPL8P62917 257 aaKnown RBP5.96□□□□□ -1.46
SYNE1-216ENST00000461872 DOLPP1Q86YN1 238 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 STPG3Q8N7X2 389 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 OR2Z1Q8NG97 314 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 ORAOV1Q8WV07 137 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 FMC1Q96HJ9 113 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 CLEC5AQ9NY25 188 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 COL4A3Q01955 1670 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 IGKV1D-43A0A0B4J1Z2 117 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 HLA-DRB1P01911 266 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 ARL14EPLP0DKL9 152 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 OR4P4Q8NGL7 312 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 SIGLEC12Q96PQ1 595 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 SCNM1Q9BWG6 230 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 OR51B2Q9Y5P1 312 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 ABCA1O95477 2261 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 ACACAQ13085 2346 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 C2orf16Q68DN1 1984 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 TRAV30A0A087WSZ9 112 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 DPRXA6NFQ7 191 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 SNCGO76070 127 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 HTR1DP28221 377 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 SAPCD1Q5SSQ6 148 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 MRGPRDQ8TDS7 321 aa5.96□□□□□ -1.46
SYNE1-216ENST00000461872 FLYWCH2Q96CP2 140 aaKnown RBP5.96□□□□□ -1.46
SYNE1-216ENST00000461872 IZUMO1RA6ND01 250 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 MEF2CQ06413 473 aaPredicted RBP5.95□□□□□ -1.46
SYNE1-216ENST00000461872 FAM90A2PQ658T7 463 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 TMEM108Q6UXF1 575 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 TMEM186Q96B77 213 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 TMEM140Q9NV12 185 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 KMT2EQ8IZD2 1858 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 H3BMH7 237 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 PPP1R17O96001 155 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 SPATA45Q537H7 98 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 WFDC1Q9HC57 220 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 TCTAP57738 103 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 RNASEKQ6P5S7 137 aaKnown RBP5.95□□□□□ -1.46
SYNE1-216ENST00000461872 SPSB3Q6PJ21 355 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 LINC01551Q86U37 167 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 PAXXQ9BUH6 204 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 MS4A6AQ9H2W1 248 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 G6PCP35575 357 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 YPEL3P61236 119 aaPredicted RBP5.95□□□□□ -1.46
SYNE1-216ENST00000461872 LYZL4Q96KX0 146 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 OPN3Q9H1Y3 402 aaPredicted RBP5.95□□□□□ -1.46
SYNE1-216ENST00000461872 SPANXA1Q9NS26 97 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 TMPRSS3P57727 454 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 RELQ04864 619 aaPredicted RBP5.95□□□□□ -1.46
SYNE1-216ENST00000461872 TMEM97Q5BJF2 176 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 OTPQ5XKR4 325 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 TTTY12Q9BZ98 90 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.95□□□□□ -1.46
SYNE1-216ENST00000461872 PRDX2P32119 198 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 SEC11AP67812 179 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 C9orf135Q5VTT2 229 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 OR4C13Q8NGP0 309 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 FAM157AC9JC47 383 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 NDUFB3O43676 98 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 MFAP2P55001 183 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 OR10AG1Q8NH19 301 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 GFRA4Q9GZZ7 299 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 ERVFRD-1P60508 538 aa5.95□□□□□ -1.46
SYNE1-216ENST00000461872 MBNL3Q9NUK0 354 aaKnown RBP5.95□□□□□ -1.46
SYNE1-216ENST00000461872 C15orf61A6NNL5 157 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 DEFA4P12838 97 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 RPS16P62249 146 aaKnown RBP5.94□□□□□ -1.46
SYNE1-216ENST00000461872 C9orf50Q5SZB4 431 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 TGIF2LXQ8IUE1 241 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 CT55Q8WUE5 264 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 CLCF1Q9UBD9 225 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 TMEM238LA0A1B0GVL6 79 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 A6NJY4 79 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 HYPMO75409 117 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 VN1R17PQ8TDU5 208 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 C12orf49Q9H741 205 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 CREBBPQ92793 2442 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 TRAV9-2A0A087WT02 112 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 NEURL1O76050 574 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 LEPROTL1O95214 131 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 SLC25A5P05141 298 aaKnown RBP5.94□□□□□ -1.46
SYNE1-216ENST00000461872 ACP1P24666 158 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 C11orf52Q96A22 123 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 SIAH2O43255 324 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 RHBDL1O75783 438 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 PRR27Q6MZM9 219 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 C11orf42Q8N5U0 333 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 TMEM74BQ9NUR3 256 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 NXPH3O95157 252 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 TNFRSF14Q92956 283 aa5.94□□□□□ -1.46
SYNE1-216ENST00000461872 FOXA2Q9Y261 457 aaPredicted RBP5.94□□□□□ -1.46
SYNE1-216ENST00000461872 ZNF324O75467 553 aaPredicted RBP5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms