RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 KBTBD11O94819 623 aa12.53□□□□□ -0.4
USP40-206ENST00000443711 AKR1C2P52895 323 aa12.53□□□□□ -0.4
USP40-206ENST00000443711 BLCAPP62952 87 aa12.53□□□□□ -0.4
USP40-206ENST00000443711 OXA1LQ15070 435 aa12.53□□□□□ -0.4
USP40-206ENST00000443711 C9orf152Q5JTZ5 239 aa12.53□□□□□ -0.4
USP40-206ENST00000443711 MINDY2Q8NBR6 621 aa12.53□□□□□ -0.4
USP40-206ENST00000443711 OR52B4Q8NGK2 314 aa12.53□□□□□ -0.4
USP40-206ENST00000443711 RNASE11Q8TAA1 199 aaKnown RBP12.53□□□□□ -0.4
USP40-206ENST00000443711 RRNAD1Q96FB5 475 aaKnown RBP12.53□□□□□ -0.4
USP40-206ENST00000443711 CLCC1Q96S66 551 aa12.53□□□□□ -0.4
USP40-206ENST00000443711 TMEM140Q9NV12 185 aa12.53□□□□□ -0.4
USP40-206ENST00000443711 SHPKQ9UHJ6 478 aa12.53□□□□□ -0.4
USP40-206ENST00000443711 PLXNB1O43157 2135 aa12.53□□□□□ -0.4
USP40-206ENST00000443711 DUXBA0A1W2PPF3 345 aa12.52□□□□□ -0.41
USP40-206ENST00000443711 UPK2O00526 184 aa12.52□□□□□ -0.41
USP40-206ENST00000443711 SNAPC5O75971 98 aa12.52□□□□□ -0.41
USP40-206ENST00000443711 IGKV1-5P01602 117 aa12.52□□□□□ -0.41
USP40-206ENST00000443711 HLA-DRB1P01911 266 aa12.52□□□□□ -0.41
USP40-206ENST00000443711 IL6RP08887 468 aaPredicted RBP12.52□□□□□ -0.41
USP40-206ENST00000443711 SRSF2Q01130 221 aaKnown RBP12.52□□□□□ -0.41
USP40-206ENST00000443711 PRSS8Q16651 343 aa12.52□□□□□ -0.41
USP40-206ENST00000443711 FAM219AQ8IW50 185 aa12.52□□□□□ -0.41
USP40-206ENST00000443711 MMD2Q8IY49 270 aa12.52□□□□□ -0.41
USP40-206ENST00000443711 SLC35G3Q8N808 338 aa12.52□□□□□ -0.41
USP40-206ENST00000443711 CHPT1Q8WUD6 406 aa12.52□□□□□ -0.41
USP40-206ENST00000443711 MITD1Q8WV92 249 aa12.52□□□□□ -0.41
USP40-206ENST00000443711 PHB2Q99623 299 aa12.52□□□□□ -0.41
USP40-206ENST00000443711 TPSG1Q9NRR2 321 aa12.52□□□□□ -0.41
USP40-206ENST00000443711 MMP24Q9Y5R2 645 aa12.52□□□□□ -0.41
USP40-206ENST00000443711 NF1P21359 2839 aa12.52□□□□□ -0.41
USP40-206ENST00000443711 SH2D7A6NKC9 451 aaPredicted RBP12.51□□□□□ -0.41
USP40-206ENST00000443711 SNRPGP15A8MWD9 76 aa12.51□□□□□ -0.41
USP40-206ENST00000443711 FCN1O00602 326 aa12.51□□□□□ -0.41
USP40-206ENST00000443711 VDAC1P21796 283 aa12.51□□□□□ -0.41
USP40-206ENST00000443711 MAS1LP35410 378 aa12.51□□□□□ -0.41
USP40-206ENST00000443711 PJVKQ0ZLH3 352 aa12.51□□□□□ -0.41
USP40-206ENST00000443711 ZNF562Q6V9R5 426 aa12.51□□□□□ -0.41
USP40-206ENST00000443711 LYZL2Q7Z4W2 148 aa12.51□□□□□ -0.41
USP40-206ENST00000443711 PRIMA1Q86XR5 153 aa12.51□□□□□ -0.41
USP40-206ENST00000443711 C12orf45Q8N5I9 185 aaPredicted RBP12.51□□□□□ -0.41
USP40-206ENST00000443711 LSM10Q969L4 123 aaKnown RBP12.51□□□□□ -0.41
USP40-206ENST00000443711 ZNF430Q9H8G1 570 aaPredicted RBP12.51□□□□□ -0.41
USP40-206ENST00000443711 C2CD3Q4AC94 2353 aa12.5□□□□□ -0.41
USP40-206ENST00000443711 KCNAB3O43448 404 aa12.5□□□□□ -0.41
USP40-206ENST00000443711 TSPAN9O75954 239 aa12.5□□□□□ -0.41
USP40-206ENST00000443711 ACTL6BO94805 426 aa12.5□□□□□ -0.41
USP40-206ENST00000443711 NDUFA7O95182 113 aa12.5□□□□□ -0.41
USP40-206ENST00000443711 CNIH1O95406 144 aa12.5□□□□□ -0.41
USP40-206ENST00000443711 CA2P00918 260 aa12.5□□□□□ -0.41
USP40-206ENST00000443711 IGHG2P01859 326 aa12.5□□□□□ -0.41
USP40-206ENST00000443711 FGF2P09038 288 aa12.5□□□□□ -0.41
USP40-206ENST00000443711 RPL8P62917 257 aaKnown RBP12.5□□□□□ -0.41
USP40-206ENST00000443711 CX3CL1P78423 397 aa12.5□□□□□ -0.41
USP40-206ENST00000443711 MRGPRG-AS1Q2M3A8 158 aa12.5□□□□□ -0.41
USP40-206ENST00000443711 ARSJQ5FYB0 599 aaPredicted RBP12.5□□□□□ -0.41
USP40-206ENST00000443711 Q6ZSV7 163 aa12.5□□□□□ -0.41
USP40-206ENST00000443711 Q8N2B8 174 aa12.5□□□□□ -0.41
USP40-206ENST00000443711 ZNF702PQ9H963 129 aa12.5□□□□□ -0.41
USP40-206ENST00000443711 IGHV7-81A0A0B4J1V7 117 aa12.49□□□□□ -0.41
USP40-206ENST00000443711 TRAV3A0A0B4J244 114 aa12.49□□□□□ -0.41
USP40-206ENST00000443711 IFNA21P01568 189 aa12.49□□□□□ -0.41
USP40-206ENST00000443711 OR9G9P0C7N8 305 aa12.49□□□□□ -0.41
USP40-206ENST00000443711 P0C879 139 aa12.49□□□□□ -0.41
USP40-206ENST00000443711 HLA-GP17693 338 aa12.49□□□□□ -0.41
USP40-206ENST00000443711 GNB1P62873 340 aa12.49□□□□□ -0.41
USP40-206ENST00000443711 RELBQ01201 579 aa12.49□□□□□ -0.41
USP40-206ENST00000443711 FXYD3Q14802 87 aa12.49□□□□□ -0.41
USP40-206ENST00000443711 TNXAQ16473 311 aa12.49□□□□□ -0.41
USP40-206ENST00000443711 Q6ZS46 218 aa12.49□□□□□ -0.41
USP40-206ENST00000443711 SLC35E3Q7Z769 313 aa12.49□□□□□ -0.41
USP40-206ENST00000443711 UXS1Q8NBZ7 420 aa12.49□□□□□ -0.41
USP40-206ENST00000443711 OR4A16Q8NH70 328 aa12.49□□□□□ -0.41
USP40-206ENST00000443711 GPR146Q96CH1 333 aa12.49□□□□□ -0.41
USP40-206ENST00000443711 HSPB9Q9BQS6 159 aa12.49□□□□□ -0.41
USP40-206ENST00000443711 OR51J1Q9H342 316 aa12.49□□□□□ -0.41
USP40-206ENST00000443711 C16orf95Q9H693 158 aa12.49□□□□□ -0.41
USP40-206ENST00000443711 FKBP11Q9NYL4 201 aa12.49□□□□□ -0.41
USP40-206ENST00000443711 PRNDQ9UKY0 176 aa12.49□□□□□ -0.41
USP40-206ENST00000443711 TMED3Q9Y3Q3 217 aa12.49□□□□□ -0.41
USP40-206ENST00000443711 A0A0G2JRQ6 117 aa12.48□□□□□ -0.41
USP40-206ENST00000443711 HOXB5P09067 269 aa12.48□□□□□ -0.41
USP40-206ENST00000443711 TATDN3Q17R31 274 aa12.48□□□□□ -0.41
USP40-206ENST00000443711 IZUMO4Q1ZYL8 232 aa12.48□□□□□ -0.41
USP40-206ENST00000443711 NMSQ5H8A3 153 aa12.48□□□□□ -0.41
USP40-206ENST00000443711 OR4F5Q8NH21 305 aa12.48□□□□□ -0.41
USP40-206ENST00000443711 OR2T6Q8NHC8 308 aa12.48□□□□□ -0.41
USP40-206ENST00000443711 COMMD5Q9GZQ3 224 aa12.48□□□□□ -0.41
USP40-206ENST00000443711 NSG2Q9Y328 171 aa12.48□□□□□ -0.41
USP40-206ENST00000443711 A0A1B0GU03 582 aa12.47□□□□□ -0.41
USP40-206ENST00000443711 C7orf66A4D0T2 115 aa12.47□□□□□ -0.41
USP40-206ENST00000443711 LINC01548A6NM66 108 aa12.47□□□□□ -0.41
USP40-206ENST00000443711 DBX1A6NMT0 343 aa12.47□□□□□ -0.41
USP40-206ENST00000443711 RBMXL2O75526 392 aaKnown RBP12.47□□□□□ -0.41
USP40-206ENST00000443711 HKR1P10072 659 aa12.47□□□□□ -0.41
USP40-206ENST00000443711 COMPP49747 757 aaPredicted RBP12.47□□□□□ -0.41
USP40-206ENST00000443711 GGNBP1Q5YKI7 109 aa12.47□□□□□ -0.41
USP40-206ENST00000443711 FOXRED2Q8IWF2 684 aa12.47□□□□□ -0.41
USP40-206ENST00000443711 ABHD5Q8WTS1 349 aa12.47□□□□□ -0.41
USP40-206ENST00000443711 ARPC1AQ92747 370 aa12.47□□□□□ -0.41
USP40-206ENST00000443711 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms