RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 IGHV4-30-4P0DP06 118 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 RPL27AP46776 148 aaKnown RBP5.95□□□□□ -1.46
CD44-211ENST00000442151 SYNJ2BPP57105 145 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 OR10A3P58181 314 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 RHOGP84095 191 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 THOC7Q6I9Y2 204 aaKnown RBP5.95□□□□□ -1.46
CD44-211ENST00000442151 OR4A47Q6IF82 309 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 OVCH2Q7RTZ1 564 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 ADAD2Q8NCV1 583 aaKnown RBP5.95□□□□□ -1.46
CD44-211ENST00000442151 DYNLRB2Q8TF09 96 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 CASTOR1Q8WTX7 329 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 TCTEX1D2Q8WW35 142 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 EEF1AKMT3Q96AZ1 226 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 ISOC1Q96CN7 298 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 SRSF8Q9BRL6 282 aaKnown RBP5.95□□□□□ -1.46
CD44-211ENST00000442151 VCX3AQ9NNX9 186 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 TXNL4BQ9NX01 149 aaKnown RBP5.95□□□□□ -1.46
CD44-211ENST00000442151 DAPK2Q9UIK4 370 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 ANXA10Q9UJ72 324 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 RRP15Q9Y3B9 282 aaKnown RBP5.95□□□□□ -1.46
CD44-211ENST00000442151 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.95□□□□□ -1.46
CD44-211ENST00000442151 SHISA3A0PJX4 238 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 NPIPB5A8MRT5 1133 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 DEFA4P12838 97 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 S100GP29377 79 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 PJVKQ0ZLH3 352 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 HSD17B13Q7Z5P4 300 aaPredicted RBP5.95□□□□□ -1.46
CD44-211ENST00000442151 SPARTQ8N0X7 666 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 MFSD4AQ8N468 514 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 TMEM167AQ8TBQ9 72 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 CXorf58Q96LI9 332 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 TM2D3Q9BRN9 247 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 C19orf73Q9NVV2 129 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 SORL1Q92673 2214 aa5.95□□□□□ -1.46
CD44-211ENST00000442151 TRBV7-1A0A0A6YYK4 115 aa5.94□□□□□ -1.46
CD44-211ENST00000442151 TRBV9A0A0B4J1U6 114 aa5.94□□□□□ -1.46
CD44-211ENST00000442151 TRIM64CA6NLI5 447 aa5.94□□□□□ -1.46
CD44-211ENST00000442151 SRRM4A7MD48 611 aaKnown RBP5.94□□□□□ -1.46
CD44-211ENST00000442151 LGALS9O00182 355 aa5.94□□□□□ -1.46
CD44-211ENST00000442151 CSN3P07498 182 aa5.94□□□□□ -1.46
CD44-211ENST00000442151 FGF2P09038 288 aa5.94□□□□□ -1.46
CD44-211ENST00000442151 SAA1P0DJI8 122 aaPredicted RBP5.94□□□□□ -1.46
CD44-211ENST00000442151 LINC00205P59089 165 aa5.94□□□□□ -1.46
CD44-211ENST00000442151 DYRK1AQ13627 763 aa5.94□□□□□ -1.46
CD44-211ENST00000442151 EXOSC2Q13868 293 aaKnown RBP5.94□□□□□ -1.46
CD44-211ENST00000442151 SFXN4Q6P4A7 337 aa5.94□□□□□ -1.46
CD44-211ENST00000442151 GPHB5Q86YW7 130 aa5.94□□□□□ -1.46
CD44-211ENST00000442151 MARC2Q969Z3 335 aa5.94□□□□□ -1.46
CD44-211ENST00000442151 S100A16Q96FQ6 103 aaKnown RBP5.94□□□□□ -1.46
CD44-211ENST00000442151 ZNF430Q9H8G1 570 aaPredicted RBP5.94□□□□□ -1.46
CD44-211ENST00000442151 SLC2A9Q9NRM0 540 aa5.94□□□□□ -1.46
CD44-211ENST00000442151 RHBDL2Q9NX52 303 aa5.94□□□□□ -1.46
CD44-211ENST00000442151 TRAV18A0A075B6X5 111 aa5.93□□□□□ -1.46
CD44-211ENST00000442151 RBFOX2O43251 390 aaKnown RBP eCLIP5.93□□□□□ -1.46
CD44-211ENST00000442151 KBTBD11O94819 623 aa5.93□□□□□ -1.46
CD44-211ENST00000442151 HPRT1P00492 218 aa5.93□□□□□ -1.46
CD44-211ENST00000442151 NFYAP23511 347 aaPredicted RBP5.93□□□□□ -1.46
CD44-211ENST00000442151 TAS2R31P59538 309 aa5.93□□□□□ -1.46
CD44-211ENST00000442151 HERV-K104P61576 105 aa5.93□□□□□ -1.46
CD44-211ENST00000442151 ERVK-16P61578 105 aa5.93□□□□□ -1.46
CD44-211ENST00000442151 RPL8P62917 257 aaKnown RBP5.93□□□□□ -1.46
CD44-211ENST00000442151 ZNF773Q6PK81 442 aa5.93□□□□□ -1.46
CD44-211ENST00000442151 SLC16A13Q7RTY0 426 aa5.93□□□□□ -1.46
CD44-211ENST00000442151 HOGA1Q86XE5 327 aa5.93□□□□□ -1.46
CD44-211ENST00000442151 Q8N1Y9 231 aa5.93□□□□□ -1.46
CD44-211ENST00000442151 BEST4Q8NFU0 473 aa5.93□□□□□ -1.46
CD44-211ENST00000442151 OR1L6Q8NGR2 347 aa5.93□□□□□ -1.46
CD44-211ENST00000442151 MAFIPQ8WZ33 124 aa5.93□□□□□ -1.46
CD44-211ENST00000442151 RBMXL1Q96E39 390 aaKnown RBP5.93□□□□□ -1.46
CD44-211ENST00000442151 FYTTD1Q96QD9 318 aaKnown RBP5.93□□□□□ -1.46
CD44-211ENST00000442151 AKIP1Q9NQ31 210 aa5.93□□□□□ -1.46
CD44-211ENST00000442151 BET1LQ9NYM9 111 aa5.93□□□□□ -1.46
CD44-211ENST00000442151 FBXL7Q9UJT9 491 aa5.93□□□□□ -1.46
CD44-211ENST00000442151 LINC00473A8K010 186 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 J3QRK9 145 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 ATP6V1G2O95670 118 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 CRYGCP07315 174 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 NQO2P16083 231 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 PSMB6P28072 239 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 FCGR2CP31995 323 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 SDC2P34741 201 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 MECP2P51608 486 aaKnown RBP5.92□□□□□ -1.46
CD44-211ENST00000442151 CMC4P56277 68 aaPredicted RBP5.92□□□□□ -1.46
CD44-211ENST00000442151 PLA2G7Q13093 441 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 CASC10Q5T4H9 136 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 IDNKQ5T6J7 187 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 LPCAT3Q6P1A2 487 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 PUSL1Q8N0Z8 303 aaKnown RBP5.92□□□□□ -1.46
CD44-211ENST00000442151 GIMAP1Q8WWP7 306 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 COMMD5Q9GZQ3 224 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 SLC5A7Q9GZV3 580 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 HRASLSQ9HDD0 168 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 IFT46Q9NQC8 304 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 GAR1Q9NY12 217 aaKnown RBP5.92□□□□□ -1.46
CD44-211ENST00000442151 FKBP11Q9NYL4 201 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 SPATA2Q9UM82 520 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 TRAV25A0A0B4J276 109 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 SMIM31A0A1B0GVY4 71 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 TMEM235A6NFC5 223 aa5.92□□□□□ -1.46
CD44-211ENST00000442151 ZNF735P0CB33 412 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms