RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 TRAPPC2P0DI81 140 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 TRAPPC2BP0DI82 140 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 ZNF35P13682 527 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 RPS4Y1P22090 263 aaKnown RBP1.23□□□□□ -2.21
PTPRC-208ENST00000427110 CFL1P23528 166 aaKnown RBP1.23□□□□□ -2.21
PTPRC-208ENST00000427110 GADD45AP24522 165 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 PSMA1P25786 263 aaKnown RBP1.23□□□□□ -2.21
PTPRC-208ENST00000427110 PSMB9P28065 219 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 CMPK1P30085 196 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 PEBP1P30086 187 aaKnown RBP1.23□□□□□ -2.21
PTPRC-208ENST00000427110 IFNGR2P38484 337 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 P2RY2P41231 377 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 CRATP43155 626 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 RANBP1P43487 201 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 MAP2K4P45985 399 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 GPR4P46093 362 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 OMPP47874 163 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 OR1E2P47887 323 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 PSMD7P51665 324 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 XKP51811 444 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 KLF3P57682 345 aaPredicted RBP1.23□□□□□ -2.21
PTPRC-208ENST00000427110 DEFA1P59665 94 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 DEFA3P59666 94 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 VBP1P61758 197 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 NCS1P62166 190 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 STX4Q12846 297 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 TSPAN31Q12999 210 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 MLLT11Q13015 90 aaPredicted RBP1.23□□□□□ -2.21
PTPRC-208ENST00000427110 TMED1Q13445 227 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 TOMM34Q15785 309 aaPredicted RBP1.23□□□□□ -2.21
PTPRC-208ENST00000427110 CST6Q15828 149 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 SSX1Q16384 188 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 ARHGAP11BQ3KRB8 267 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 NKAIN1Q4KMZ8 207 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 SPIN3Q5JUX0 258 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 UBE2NLQ5JXB2 153 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 NXNL2Q5VZ03 156 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 ZNF660Q6AZW8 331 aaPredicted RBP1.23□□□□□ -2.21
PTPRC-208ENST00000427110 SLC48A1Q6P1K1 146 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 CD200R1LQ6Q8B3 271 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 PLEKHG7Q6ZR37 379 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 RASSF6Q6ZTQ3 369 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 AHSA2Q719I0 299 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 ADM2Q7Z4H4 148 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 TMEM144Q7Z5S9 345 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 PRNTQ86SH4 94 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 GALNT10Q86SR1 603 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 TRAPPC5Q8IUR0 188 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 FAM58AQ8N1B3 248 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 CA13Q8N1Q1 262 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 STX19Q8N4C7 294 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 MORN4Q8NDC4 146 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 OR4D11Q8NGI4 311 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 OR8K3Q8NH51 312 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 MCFD2Q8NI22 146 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 GNPDA2Q8TDQ7 276 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 DOK4Q8TEW6 326 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 MITD1Q8WV92 249 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 ITLN2Q8WWU7 325 aaPredicted RBP1.23□□□□□ -2.21
PTPRC-208ENST00000427110 FGF13Q92913 245 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 YIPF5Q969M3 257 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 SLC35B4Q969S0 331 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 CIDECQ96AQ7 238 aaPredicted RBP1.23□□□□□ -2.21
PTPRC-208ENST00000427110 MS4A6EQ96DS6 147 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 TVP23CQ96ET8 276 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 ADTRPQ96IZ2 230 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 SLC35G5Q96KT7 338 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 PRAP1Q96NZ9 151 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 TRNT1Q96Q11 434 aaKnown RBP1.23□□□□□ -2.21
PTPRC-208ENST00000427110 MGLLQ99685 303 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 WFDC6Q9BQY6 131 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 CCDC32Q9BV29 185 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 MND1Q9BWT6 205 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 MAP1LC3CQ9BXW4 147 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 PRRG3Q9BZD7 231 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 PLA2G12AQ9BZM1 189 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 SRRQ9GZT4 340 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 CCDC90BQ9GZT6 254 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 AICDAQ9GZX7 198 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 CHRNA10Q9GZZ6 450 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 OR51I1Q9H343 314 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 PARP11Q9NR21 331 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 NDUFB11Q9NX14 153 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 MS4A12Q9NXJ0 267 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 IL20Q9NYY1 176 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 DNAJC27Q9NZQ0 273 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 TAC3Q9UHF0 121 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 ANXA10Q9UJ72 324 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 ZNF391Q9UJN7 358 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 PAIP2BQ9ULR5 123 aaKnown RBP1.23□□□□□ -2.21
PTPRC-208ENST00000427110 FAM32AQ9Y421 112 aaKnown RBP1.23□□□□□ -2.21
PTPRC-208ENST00000427110 PCYT1BQ9Y5K3 369 aaPredicted RBP1.23□□□□□ -2.21
PTPRC-208ENST00000427110 C5orf42Q9H799 3197 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 MUC19Q7Z5P9 8384 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 BRWD1Q9NSI6 2320 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 REV3LO60673 3130 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 SPAG17Q6Q759 2223 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 UNC13CQ8NB66 2214 aa1.23□□□□□ -2.21
PTPRC-208ENST00000427110 FREM3P0C091 2139 aa1.22□□□□□ -2.21
PTPRC-208ENST00000427110 MYO7BQ6PIF6 2116 aa1.22□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms