RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 TREML4Q6UXN2 200 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 MOB1BQ7L9L4 216 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 VASH2Q86V25 355 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 SLC25A45Q8N413 288 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 KLHDC1Q8N7A1 406 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 ZNF645Q8N7E2 425 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 OR2D3Q8NGH3 330 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 NEUROG1Q92886 237 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 C1orf159Q96HA4 380 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 GGTLC1Q9BX51 225 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 MBNL3Q9NUK0 354 aaKnown RBP5.65□□□□□ -1.5
VPS39-202ENST00000348544 R4GN57 208 aa5.65□□□□□ -1.5
VPS39-202ENST00000348544 TRGV10A0A0A0MS01 117 aa5.65□□□□□ -1.51
VPS39-202ENST00000348544 DNPH1O43598 174 aa5.65□□□□□ -1.51
VPS39-202ENST00000348544 FOXH1O75593 365 aa5.65□□□□□ -1.51
VPS39-202ENST00000348544 OR2H2O95918 312 aa5.65□□□□□ -1.51
VPS39-202ENST00000348544 IGLL1P15814 213 aa5.65□□□□□ -1.51
VPS39-202ENST00000348544 NTF3P20783 257 aa5.65□□□□□ -1.51
VPS39-202ENST00000348544 GCHFRP30047 84 aa5.65□□□□□ -1.51
VPS39-202ENST00000348544 OPRK1P41145 380 aa5.65□□□□□ -1.51
VPS39-202ENST00000348544 CLDN18P56856 261 aa5.65□□□□□ -1.51
VPS39-202ENST00000348544 ARF1P84077 181 aaKnown RBP5.65□□□□□ -1.51
VPS39-202ENST00000348544 RELBQ01201 579 aa5.65□□□□□ -1.51
VPS39-202ENST00000348544 FXYD3Q14802 87 aa5.65□□□□□ -1.51
VPS39-202ENST00000348544 SPATA12Q7Z6I5 190 aa5.65□□□□□ -1.51
VPS39-202ENST00000348544 MUC15Q8N387 334 aa5.65□□□□□ -1.51
VPS39-202ENST00000348544 POM121L2Q96KW2 1035 aa5.65□□□□□ -1.51
VPS39-202ENST00000348544 RNASE7Q9H1E1 156 aaKnown RBP5.65□□□□□ -1.51
VPS39-202ENST00000348544 MS4A5Q9H3V2 200 aa5.65□□□□□ -1.51
VPS39-202ENST00000348544 PRSS47A8MTI9 375 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 PRSS46E5RG02 174 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 RAB29O14966 203 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 RBMXL2O75526 392 aaKnown RBP5.64□□□□□ -1.51
VPS39-202ENST00000348544 MT-ND6P03923 174 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 VEGFBP49765 207 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 CENPWQ5EE01 88 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 STUMQ69YW2 141 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 MRPL54Q6P161 138 aaKnown RBP5.64□□□□□ -1.51
VPS39-202ENST00000348544 EBLN2Q6P2I7 272 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 H2BFWTQ7Z2G1 175 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 DOLPP1Q86YN1 238 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 OR52L2PQ8NGH6 319 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 OR4P4Q8NGL7 312 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 OR10D3Q8NH80 312 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 KRTAP3-3Q9BYR6 98 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 KRTAP3-2Q9BYR7 98 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 SEPSECSQ9HD40 501 aaKnown RBP5.64□□□□□ -1.51
VPS39-202ENST00000348544 CDC42EP3Q9UKI2 254 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 LY96Q9Y6Y9 160 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 TRAV30A0A087WSZ9 112 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 CBY3A6NI87 242 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 LINC00473A8K010 186 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 OR10J4P0C629 311 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 OR9G9P0C7N8 305 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 RFPL3SP0C7P2 107 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 RHOBP62745 196 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 GNG3P63215 75 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 RHOGP84095 191 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 SLAQ13239 276 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 LDLRAD2Q5SZI1 272 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 WDR73Q6P4I2 378 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 C19orf35Q6ZS72 473 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 WDR86Q86TI4 376 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 ZNF439Q8NDP4 499 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 OR5B3Q8NH48 314 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 C18orf32Q8TCD1 76 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 SSMEM1Q8WWF3 244 aa5.64□□□□□ -1.51
VPS39-202ENST00000348544 TRAV9-2A0A087WT02 112 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 OR5B21A6NL26 309 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 GJE1A6NN92 205 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 H0YJW9 148 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 AMY1AP04745 511 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 PSG1P11464 419 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 S100A7P31151 101 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 CEBPDP49716 269 aaPredicted RBP5.63□□□□□ -1.51
VPS39-202ENST00000348544 OCIAD2Q56VL3 154 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 ASPHD1Q5U4P2 390 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 MRPL14Q6P1L8 145 aaKnown RBP5.63□□□□□ -1.51
VPS39-202ENST00000348544 GCNT2Q8N0V5 402 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 PNKDQ8N490 385 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 KIR3DL3Q8N743 410 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 CST9LQ9H4G1 147 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 GP6Q9HCN6 339 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 TECRQ9NZ01 308 aaKnown RBP5.63□□□□□ -1.51
VPS39-202ENST00000348544 BRWD1Q9NSI6 2320 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 IGHV1-45A0A0A0MS14 117 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 ZNF891A8MT65 544 aaPredicted RBP5.63□□□□□ -1.51
VPS39-202ENST00000348544 C12orf77C9JDV5 145 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 CDIPTO14735 213 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 TAX1BP3O14907 124 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 CGAP01215 116 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 EN2P19622 333 aaPredicted RBP5.63□□□□□ -1.51
VPS39-202ENST00000348544 SSR4P51571 173 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 EFNB3Q15768 340 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 VAMP3Q15836 100 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 PMCHL1Q16048 86 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 TNXAQ16473 311 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 TBR1Q16650 682 aa5.63□□□□□ -1.51
VPS39-202ENST00000348544 PDLIM3Q53GG5 364 aaPredicted RBP5.63□□□□□ -1.51
VPS39-202ENST00000348544 Q56UQ5 140 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms