RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 ZNF383Q8NA42 475 aa8.52□□□□□ -1.05
LIMA1-201ENST00000341247 Q8NA96 180 aa8.52□□□□□ -1.05
LIMA1-201ENST00000341247 LRFN3Q9BTN0 628 aa8.52□□□□□ -1.05
LIMA1-201ENST00000341247 SCNM1Q9BWG6 230 aa8.52□□□□□ -1.05
LIMA1-201ENST00000341247 HIPK2Q9H2X6 1198 aa8.52□□□□□ -1.05
LIMA1-201ENST00000341247 TUBA4BQ9H853 241 aa8.52□□□□□ -1.05
LIMA1-201ENST00000341247 IL19Q9UHD0 177 aa8.52□□□□□ -1.05
LIMA1-201ENST00000341247 PLXNB1O43157 2135 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 F2RL2O00254 374 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 FOLR2P14207 255 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 CFHR2P36980 270 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 RELBQ01201 579 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 ELOBQ15370 118 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 MIC13Q5XKP0 118 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 STUMQ69YW2 141 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 TCF19Q9Y242 345 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 ABCA1O95477 2261 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 RAI1Q7Z5J4 1906 aaPredicted RBP8.51□□□□□ -1.05
LIMA1-201ENST00000341247 IFNA1P01562 189 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 IGKV1-16P04430 117 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 ADIPOQQ15848 244 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 RNF212Q495C1 297 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 PDZD11Q5EBL8 140 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 CST9LP1Q5W188 147 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 HEPN1Q6WQI6 88 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 SPACA3Q8IXA5 215 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 ACTR3CQ9C0K3 210 aaPredicted RBP8.51□□□□□ -1.05
LIMA1-201ENST00000341247 CTXND1A0A1B0GTU2 59 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 YIF1AO95070 293 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 NBL1P41271 181 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 MEF2BQ02080 365 aaPredicted RBP8.51□□□□□ -1.05
LIMA1-201ENST00000341247 ATP6V1FQ16864 119 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 OR4A47Q6IF82 309 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 MS4A5Q9H3V2 200 aa8.51□□□□□ -1.05
LIMA1-201ENST00000341247 THBDP07204 575 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 PSMB3P49720 205 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 DLX1P56177 255 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 NDUFA6P56556 154 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 SPCS3P61009 180 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 OR51G1Q8NGK1 321 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 OR4S2Q8NH73 311 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 MED13LQ71F56 2210 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 C5orf52A6NGY3 159 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 PAX6P26367 422 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 CDC34P49427 236 aaPredicted RBP8.5□□□□□ -1.05
LIMA1-201ENST00000341247 PDLIM3Q53GG5 364 aaPredicted RBP8.5□□□□□ -1.05
LIMA1-201ENST00000341247 WDR25Q64LD2 544 aaPredicted RBP8.5□□□□□ -1.05
LIMA1-201ENST00000341247 SLC35E3Q7Z769 313 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 KDF1Q8NAX2 398 aaPredicted RBP8.5□□□□□ -1.05
LIMA1-201ENST00000341247 NANPQ8TBE9 248 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 TMEM170AQ8WVE7 144 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 SAP30LQ9HAJ7 183 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 CRYBG3Q68DQ2 2970 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 SPTBN1Q01082 2364 aaKnown RBP8.5□□□□□ -1.05
LIMA1-201ENST00000341247 A0A1W2PPV4 95 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 TRGC2P03986 189 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 CGB3P0DN86 165 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 CGB7P0DN87 165 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 MOB3BQ86TA1 216 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 TCTEX1D1Q8N7M0 179 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 IDI2-AS1Q9NZ38 188 aa8.5□□□□□ -1.05
LIMA1-201ENST00000341247 SLC25A10Q9UBX3 287 aaPredicted RBP8.5□□□□□ -1.05
LIMA1-201ENST00000341247 GFRA3O60609 400 aa8.49□□□□□ -1.05
LIMA1-201ENST00000341247 GATA4P43694 442 aa8.49□□□□□ -1.05
LIMA1-201ENST00000341247 MEOX2P50222 304 aa8.49□□□□□ -1.05
LIMA1-201ENST00000341247 TDGF1P3P51864 188 aa8.49□□□□□ -1.05
LIMA1-201ENST00000341247 RPL31P62899 125 aaKnown RBP8.49□□□□□ -1.05
LIMA1-201ENST00000341247 TREML4Q6UXN2 200 aa8.49□□□□□ -1.05
LIMA1-201ENST00000341247 ZNF788Q6ZQV5 615 aa8.49□□□□□ -1.05
LIMA1-201ENST00000341247 WFIKKN1Q96NZ8 548 aa8.49□□□□□ -1.05
LIMA1-201ENST00000341247 ZNF251Q9BRH9 671 aa8.49□□□□□ -1.05
LIMA1-201ENST00000341247 SDF2L1Q9HCN8 221 aa8.49□□□□□ -1.05
LIMA1-201ENST00000341247 KLF2Q9Y5W3 355 aaPredicted RBP8.49□□□□□ -1.05
LIMA1-201ENST00000341247 C17orf100A8MU93 164 aa8.49□□□□□ -1.05
LIMA1-201ENST00000341247 C17orf112F2Z3M2 114 aa8.49□□□□□ -1.05
LIMA1-201ENST00000341247 HNF1AP20823 631 aa8.49□□□□□ -1.05
LIMA1-201ENST00000341247 RAB7AP51149 207 aa8.49□□□□□ -1.05
LIMA1-201ENST00000341247 GNB2P62879 340 aa8.49□□□□□ -1.05
LIMA1-201ENST00000341247 LYPD2Q6UXB3 125 aa8.49□□□□□ -1.05
LIMA1-201ENST00000341247 ZCCHC14Q8WYQ9 949 aaKnown RBP8.49□□□□□ -1.05
LIMA1-201ENST00000341247 ENY2Q9NPA8 101 aa8.49□□□□□ -1.05
LIMA1-201ENST00000341247 TIMM9Q9Y5J7 89 aa8.49□□□□□ -1.05
LIMA1-201ENST00000341247 DSCAML1Q8TD84 2053 aa8.49□□□□□ -1.05
LIMA1-201ENST00000341247 TRGV8A0A0C4DH27 118 aa8.49□□□□□ -1.05
LIMA1-201ENST00000341247 SRRM4A7MD48 611 aaKnown RBP8.49□□□□□ -1.05
LIMA1-201ENST00000341247 ATP5G3P48201 142 aa8.49□□□□□ -1.05
LIMA1-201ENST00000341247 PARLQ9H300 379 aa8.49□□□□□ -1.05
LIMA1-201ENST00000341247 CELSR2Q9HCU4 2923 aa8.48□□□□□ -1.05
LIMA1-201ENST00000341247 AKAP6Q13023 2319 aa8.48□□□□□ -1.05
LIMA1-201ENST00000341247 LYNX1G3V0Z9 82 aa8.48□□□□□ -1.05
LIMA1-201ENST00000341247 ACTL6BO94805 426 aa8.48□□□□□ -1.05
LIMA1-201ENST00000341247 LYNX1P0DP58 116 aa8.48□□□□□ -1.05
LIMA1-201ENST00000341247 VDAC2P45880 294 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-201ENST00000341247 DIAPH2-AS1Q14236 149 aa8.48□□□□□ -1.05
LIMA1-201ENST00000341247 ACOT6Q3I5F7 207 aaPredicted RBP8.48□□□□□ -1.05
LIMA1-201ENST00000341247 FAM222BQ8WU58 562 aa8.48□□□□□ -1.05
LIMA1-201ENST00000341247 DDB2Q92466 427 aa8.48□□□□□ -1.05
LIMA1-201ENST00000341247 YPEL4Q96NS1 127 aa8.48□□□□□ -1.05
LIMA1-201ENST00000341247 DYNLRB1Q9NP97 96 aa8.48□□□□□ -1.05
LIMA1-201ENST00000341247 SLC35D1Q9NTN3 355 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms