RNA–Protein interactions for RNA: ENST00000319980.10

IFT88-201, Transcript of intraflagellar transport 88, humanhuman

TSL 1 (best) BASIC

Gene IFT88, Length 3,091 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT88-201ENST00000319980 HIPK2Q9H2X6 1198 aa6.21□□□□□ -1.42
IFT88-201ENST00000319980 SMDT1Q9H4I9 107 aa6.21□□□□□ -1.42
IFT88-201ENST00000319980 PUS1Q9Y606 427 aaKnown RBP eCLIP6.21□□□□□ -1.42
IFT88-201ENST00000319980 B9A039 149 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 LYNX1G3V0Z9 82 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 CT45A6P0DMU7 189 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 CT45A5P0DMU8 189 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 CT45A7P0DMV0 189 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 LYNX1P0DP58 116 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 GNB2P62879 340 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 TFF3Q07654 80 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 AARDQ4LEZ3 155 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 TMEM41BQ5BJD5 291 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 ZNF787Q6DD87 383 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 HEPN1Q6WQI6 88 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 MUC15Q8N387 334 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 RPP25LQ8N5L8 163 aaKnown RBP6.2□□□□□ -1.42
IFT88-201ENST00000319980 CA5BP1Q8WTZ4 195 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 CLCC1Q96S66 551 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 PARD6GQ9BYG4 376 aaPredicted RBP6.2□□□□□ -1.42
IFT88-201ENST00000319980 CTSZQ9UBR2 303 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 TRAV1-1A0A0B4J248 108 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 C7orf77A4D0Y5 90 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 RRHO14718 337 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 HMGB3O15347 200 aaKnown RBP6.2□□□□□ -1.42
IFT88-201ENST00000319980 SCAF4O95104 1147 aaKnown RBP6.2□□□□□ -1.42
IFT88-201ENST00000319980 IGKV1D-33P01593 117 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 IGKV1-33P01594 117 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 DAOP14920 347 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 ICAM4Q14773 271 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 HFEQ30201 348 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 OR52E5Q8NH55 327 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 ADTRPQ96IZ2 230 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 TCF19Q9Y242 345 aa6.2□□□□□ -1.42
IFT88-201ENST00000319980 YLPM1P49750 1951 aaKnown RBP6.2□□□□□ -1.42
IFT88-201ENST00000319980 H7C2Y5 167 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 TNFRSF13BO14836 293 aaPredicted RBP6.19□□□□□ -1.42
IFT88-201ENST00000319980 SIAH2O43255 324 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 CD1BP29016 333 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 REG1BP48304 166 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 HOXA1P49639 335 aaPredicted RBP6.19□□□□□ -1.42
IFT88-201ENST00000319980 ADORA2A-AS1P86434 159 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 EFNB3Q15768 340 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 TMEM30BQ3MIR4 351 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 ACSM6Q6P461 480 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 ZNF429Q86V71 674 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 CYB561D1Q8N8Q1 229 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 ZNF709Q8N972 641 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 HINT2Q9BX68 163 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 NPCDR1Q9BY65 106 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 SLC35D1Q9NTN3 355 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 SLC39A9Q9NUM3 307 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 SMCO3A2RU48 225 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 C15orf61A6NNL5 157 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 SRRM4A7MD48 611 aaKnown RBP6.19□□□□□ -1.42
IFT88-201ENST00000319980 HRASP01112 189 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 OPN1MWP04001 364 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 IFNA4P05014 189 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 SRP19P09132 144 aaKnown RBP6.19□□□□□ -1.42
IFT88-201ENST00000319980 OPN1MW2P0DN77 364 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 OPN1MW3P0DN78 364 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 MYOD1P15172 320 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 VDAC2P45880 294 aaPredicted RBP6.19□□□□□ -1.42
IFT88-201ENST00000319980 RPP30P78346 268 aaKnown RBP6.19□□□□□ -1.42
IFT88-201ENST00000319980 LY6DQ14210 128 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 RTL8BQ17RB0 113 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 FBXL19-AS1Q494R0 122 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 ZNF506Q5JVG8 444 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 CENPVQ7Z7K6 275 aaPredicted RBP6.19□□□□□ -1.42
IFT88-201ENST00000319980 PIP4P2Q8N4L2 257 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 OR13D1Q8NGV5 346 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 MBD3L1Q8WWY6 194 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 UNKLQ9H9P5 680 aaKnown RBP6.19□□□□□ -1.42
IFT88-201ENST00000319980 SMCO4Q9NRQ5 59 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 TIMM9Q9Y5J7 89 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 RAI1Q7Z5J4 1906 aaPredicted RBP6.19□□□□□ -1.42
IFT88-201ENST00000319980 MAP1LC3B2A6NCE7 125 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 HSPB1P04792 205 aaKnown RBP6.19□□□□□ -1.42
IFT88-201ENST00000319980 ARG1P05089 322 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 DEFA4P12838 97 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 LOXP28300 417 aaPredicted RBP6.19□□□□□ -1.42
IFT88-201ENST00000319980 VWC2Q2TAL6 325 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 FFAR4Q5NUL3 377 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 OR10A7Q8NGE5 316 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 OR10G4Q8NGN3 311 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 OR10G9Q8NGN4 311 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 OR10G7Q8NGN6 311 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 OR10X1Q8NGY0 326 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 LHX4Q969G2 390 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 ISOC2Q96AB3 205 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 MAP1LC3BQ9GZQ8 125 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 SLC25A22Q9H936 323 aa6.19□□□□□ -1.42
IFT88-201ENST00000319980 LRBAP50851 2863 aa6.18□□□□□ -1.42
IFT88-201ENST00000319980 ARFGEF3Q5TH69 2177 aa6.18□□□□□ -1.42
IFT88-201ENST00000319980 LY86O95711 162 aa6.18□□□□□ -1.42
IFT88-201ENST00000319980 COL8A2P25067 703 aa6.18□□□□□ -1.42
IFT88-201ENST00000319980 HSPE1P61604 102 aaKnown RBP6.18□□□□□ -1.42
IFT88-201ENST00000319980 KHDC3LQ587J8 217 aa6.18□□□□□ -1.42
IFT88-201ENST00000319980 MRPL20Q9BYC9 149 aaKnown RBP6.18□□□□□ -1.42
IFT88-201ENST00000319980 TMEM14BQ9NUH8 114 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms