RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SCO2A0A1W2PP80 73 aa14.77□□□□□ -0.04
SYNPO-201ENST00000307662 TBX6O95947 436 aaPredicted RBP14.77□□□□□ -0.04
SYNPO-201ENST00000307662 RPL23P62829 140 aaKnown RBP14.77□□□□□ -0.04
SYNPO-201ENST00000307662 GOLT1AQ6ZVE7 132 aa14.77□□□□□ -0.04
SYNPO-201ENST00000307662 TFF3Q07654 80 aa14.77□□□□□ -0.05
SYNPO-201ENST00000307662 ST6GALNAC6Q969X2 333 aa14.77□□□□□ -0.05
SYNPO-201ENST00000307662 PRDM13Q9H4Q3 707 aa14.77□□□□□ -0.05
SYNPO-201ENST00000307662 TMEM56-RWDD3S4R434 201 aa14.77□□□□□ -0.05
SYNPO-201ENST00000307662 ATG2BQ96BY7 2078 aa14.77□□□□□ -0.05
SYNPO-201ENST00000307662 CKAP5Q14008 2032 aa14.77□□□□□ -0.05
SYNPO-201ENST00000307662 TRAV30A0A087WSZ9 112 aa14.77□□□□□ -0.05
SYNPO-201ENST00000307662 C17orf51A8MQB3 221 aa14.77□□□□□ -0.05
SYNPO-201ENST00000307662 NPIPB6E9PJ23 425 aa14.77□□□□□ -0.05
SYNPO-201ENST00000307662 H3BTX0 84 aa14.77□□□□□ -0.05
SYNPO-201ENST00000307662 HIST1H2BKO60814 126 aa14.77□□□□□ -0.05
SYNPO-201ENST00000307662 HIST1H2BJP06899 126 aa14.77□□□□□ -0.05
SYNPO-201ENST00000307662 PRSS2P07478 247 aa14.77□□□□□ -0.05
SYNPO-201ENST00000307662 HIST1H2BOP23527 126 aa14.77□□□□□ -0.05
SYNPO-201ENST00000307662 HIST1H2BBP33778 126 aa14.77□□□□□ -0.05
SYNPO-201ENST00000307662 HIST1H2BDP58876 126 aa14.77□□□□□ -0.05
SYNPO-201ENST00000307662 HIST1H2BCP62807 126 aa14.77□□□□□ -0.05
SYNPO-201ENST00000307662 HIST1H1AQ02539 215 aaPredicted RBP14.77□□□□□ -0.05
SYNPO-201ENST00000307662 HIST2H2BEQ16778 126 aa14.77□□□□□ -0.05
SYNPO-201ENST00000307662 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.77□□□□□ -0.05
SYNPO-201ENST00000307662 HIST1H2BHQ93079 126 aa14.77□□□□□ -0.05
SYNPO-201ENST00000307662 EAF1Q96JC9 268 aaPredicted RBP14.77□□□□□ -0.05
SYNPO-201ENST00000307662 HIST1H2BNQ99877 126 aa14.77□□□□□ -0.05
SYNPO-201ENST00000307662 HIST1H2BMQ99879 126 aa14.77□□□□□ -0.05
SYNPO-201ENST00000307662 LOXL3P58215 753 aa14.76□□□□□ -0.05
SYNPO-201ENST00000307662 ZNF124Q15973 351 aa14.76□□□□□ -0.05
SYNPO-201ENST00000307662 TBR1Q16650 682 aa14.76□□□□□ -0.05
SYNPO-201ENST00000307662 CHRNA10Q9GZZ6 450 aa14.76□□□□□ -0.05
SYNPO-201ENST00000307662 TDRD15B5MCY1 1934 aaKnown RBP14.76□□□□□ -0.05
SYNPO-201ENST00000307662 ZNF638Q14966 1978 aaKnown RBP14.76□□□□□ -0.05
SYNPO-201ENST00000307662 GREB1LQ9C091 1923 aaPredicted RBP14.76□□□□□ -0.05
SYNPO-201ENST00000307662 OR11H12B2RN74 326 aa14.76□□□□□ -0.05
SYNPO-201ENST00000307662 PCSK4Q6UW60 755 aa14.76□□□□□ -0.05
SYNPO-201ENST00000307662 OR11H1Q8NG94 326 aa14.76□□□□□ -0.05
SYNPO-201ENST00000307662 OR11H2Q8NH07 326 aa14.76□□□□□ -0.05
SYNPO-201ENST00000307662 SPOCK3Q9BQ16 436 aa14.76□□□□□ -0.05
SYNPO-201ENST00000307662 PHLDA3Q9Y5J5 127 aa14.76□□□□□ -0.05
SYNPO-201ENST00000307662 ATP5G3P48201 142 aa14.76□□□□□ -0.05
SYNPO-201ENST00000307662 FOXC1Q12948 553 aa14.76□□□□□ -0.05
SYNPO-201ENST00000307662 CGAP01215 116 aa14.76□□□□□ -0.05
SYNPO-201ENST00000307662 MFAP4P55083 255 aa14.76□□□□□ -0.05
SYNPO-201ENST00000307662 NPIPB3Q92617 1050 aa14.76□□□□□ -0.05
SYNPO-201ENST00000307662 SRXN1Q9BYN0 137 aa14.76□□□□□ -0.05
SYNPO-201ENST00000307662 IGFBP3P17936 291 aaPredicted RBP14.75□□□□□ -0.05
SYNPO-201ENST00000307662 DLX6P56179 175 aa14.75□□□□□ -0.05
SYNPO-201ENST00000307662 SLC25A53Q5H9E4 307 aa14.75□□□□□ -0.05
SYNPO-201ENST00000307662 ZNF324BQ6AW86 544 aaPredicted RBP14.75□□□□□ -0.05
SYNPO-201ENST00000307662 CGB1A6NKQ9 187 aa14.75□□□□□ -0.05
SYNPO-201ENST00000307662 SERF1AO75920 110 aa14.75□□□□□ -0.05
SYNPO-201ENST00000307662 PRSS8Q16651 343 aa14.75□□□□□ -0.05
SYNPO-201ENST00000307662 C19orf54Q5BKX5 351 aa14.75□□□□□ -0.05
SYNPO-201ENST00000307662 OR5P3Q8WZ94 311 aa14.75□□□□□ -0.05
SYNPO-201ENST00000307662 SPCS1Q9Y6A9 102 aa14.75□□□□□ -0.05
SYNPO-201ENST00000307662 KLK15Q9H2R5 256 aa14.75□□□□□ -0.05
SYNPO-201ENST00000307662 TTC9CQ8N5M4 171 aa14.75□□□□□ -0.05
SYNPO-201ENST00000307662 NEUROG1Q92886 237 aa14.75□□□□□ -0.05
SYNPO-201ENST00000307662 LINC00305Q7Z4B0 112 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 ZNF525Q8N782 197 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 TMEM160Q9NX00 188 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 C1QTNF9BB2RNN3 333 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 SS18L1O75177 396 aaPredicted RBP14.74□□□□□ -0.05
SYNPO-201ENST00000307662 ADRA2AP08913 450 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 TMEM30BQ3MIR4 351 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 HILPDAQ9Y5L2 63 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 TNS1Q9HBL0 1735 aaKnown RBP14.74□□□□□ -0.05
SYNPO-201ENST00000307662 APOHP02749 345 aaPredicted RBP14.74□□□□□ -0.05
SYNPO-201ENST00000307662 OR4C13Q8NGP0 309 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 NRN1Q9NPD7 142 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 SOX21Q9Y651 276 aaPredicted RBP14.74□□□□□ -0.05
SYNPO-201ENST00000307662 RBBP6Q7Z6E9 1792 aaKnown RBP14.74□□□□□ -0.05
SYNPO-201ENST00000307662 TRAV8-6A0A0B4J262 113 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 C19orf67A6NJJ6 358 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 SNAI2O43623 268 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 CTSBP07858 339 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 HEPN1Q6WQI6 88 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 FAM19A2Q8N3H0 131 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 COPS9Q8WXC6 57 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 LEAP2Q969E1 77 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 MRPL16Q9NX20 251 aaKnown RBP14.74□□□□□ -0.05
SYNPO-201ENST00000307662 A0A1B0GWB2 263 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 B4E171 279 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 LDLRAD4O15165 306 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 TSPAN7P41732 249 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 RELQ04864 619 aaPredicted RBP14.74□□□□□ -0.05
SYNPO-201ENST00000307662 TM4SF20Q53R12 229 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 C18orf12Q96KH6 178 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 CCDC88CQ9P219 2028 aa14.74□□□□□ -0.05
SYNPO-201ENST00000307662 TRBV20OR9-2A0A075B6H5 130 aa14.73□□□□□ -0.05
SYNPO-201ENST00000307662 A0A1W2PS18 150 aa14.73□□□□□ -0.05
SYNPO-201ENST00000307662 REG1AP05451 166 aa14.73□□□□□ -0.05
SYNPO-201ENST00000307662 EBLN2Q6P2I7 272 aa14.73□□□□□ -0.05
SYNPO-201ENST00000307662 LRTM2Q8N967 370 aa14.73□□□□□ -0.05
SYNPO-201ENST00000307662 KLF14Q8TD94 323 aaPredicted RBP14.73□□□□□ -0.05
SYNPO-201ENST00000307662 SLC25A28Q96A46 364 aa14.73□□□□□ -0.05
SYNPO-201ENST00000307662 PRELID3AQ96N28 172 aa14.73□□□□□ -0.05
SYNPO-201ENST00000307662 FAM117AQ9C073 453 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms