RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 KRTAP1-1Q07627 177 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 MZT1Q08AG7 82 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 ABHD12Q8N2K0 398 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 SMIM8Q96KF7 97 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 PBDC1Q9BVG4 233 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 GCM1Q9NP62 436 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 SLC39A9Q9NUM3 307 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 CR1P17927 2039 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 TRGV10A0A0A0MS01 117 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 TRAV3A0A0B4J244 114 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 MARCH11A6NNE9 402 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 ZNF727A8MUV8 499 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 IGLV2-14P01704 120 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 GAPDHP04406 335 aaKnown RBP7.11□□□□□ -1.27
VPS4B-201ENST00000238497 SEC11BP0C7V7 166 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 LYL1P12980 280 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 HNF1AP20823 631 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 SULT1A1P50225 295 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 PAX9P55771 341 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 SLC35E4Q6ICL7 350 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 DTD1Q8TEA8 209 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 TIMD4Q96H15 378 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 ZNF665Q9H7R5 613 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.11□□□□□ -1.27
VPS4B-201ENST00000238497 MED9Q9NWA0 146 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 IGHV1-69-2A0A0G2JMI3 117 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 DNASE2O00115 360 aaPredicted RBP7.11□□□□□ -1.27
VPS4B-201ENST00000238497 MMP23AO75900 390 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 SPP1P10451 314 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 GZMHP20718 246 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 KITLGP21583 273 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 HOXA1P49639 335 aaPredicted RBP7.11□□□□□ -1.27
VPS4B-201ENST00000238497 ZNF134P52741 427 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 UBE2G2P60604 165 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 RAB2AP61019 212 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 FAM122CQ6P4D5 195 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 IL34Q6ZMJ4 242 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 FAM24BQ8N5W8 94 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 OR10P1Q8NGE3 313 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 RAB40CQ96S21 281 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 ATP5SQ99766 215 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 QTRT1Q9BXR0 403 aaKnown RBP7.11□□□□□ -1.27
VPS4B-201ENST00000238497 TMPRSS5Q9H3S3 457 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 RPRMQ9NS64 109 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 AURKAIP1Q9NWT8 199 aaPredicted RBP7.11□□□□□ -1.27
VPS4B-201ENST00000238497 CALYQ9NYX4 217 aa7.11□□□□□ -1.27
VPS4B-201ENST00000238497 STRAPQ9Y3F4 350 aaKnown RBP7.11□□□□□ -1.27
VPS4B-201ENST00000238497 A0A1W2PPE2 198 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.1□□□□□ -1.27
VPS4B-201ENST00000238497 MGST3O14880 152 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 SRD5A1P18405 259 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 FGF7P21781 194 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 RND3P61587 244 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 SRSF2Q01130 221 aaKnown RBP7.1□□□□□ -1.27
VPS4B-201ENST00000238497 CR1LQ2VPA4 569 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 AWAT1Q58HT5 328 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 BTNL8Q6UX41 500 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 PRIMA1Q86XR5 153 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 PARP11Q9NR21 331 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 CDC42EP3Q9UKI2 254 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 PRELID3BQ9Y3B1 194 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 MMP24Q9Y5R2 645 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 SRRM5B3KS81 715 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 PAX6P26367 422 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 SNCAP37840 140 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 MRPS11P82912 194 aaKnown RBP7.1□□□□□ -1.27
VPS4B-201ENST00000238497 TNFRSF9Q07011 255 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 HMGN3Q15651 99 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 CLRN3Q8NCR9 226 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 SSMEM1Q8WWF3 244 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 EDARADDQ8WWZ3 215 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 LHX4Q969G2 390 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 C5orf30Q96GV9 206 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 CABLES2Q9BTV7 478 aa7.1□□□□□ -1.27
VPS4B-201ENST00000238497 PATZ1Q9HBE1 687 aaKnown RBP7.1□□□□□ -1.27
VPS4B-201ENST00000238497 MBNL3Q9NUK0 354 aaKnown RBP7.1□□□□□ -1.27
VPS4B-201ENST00000238497 J3QW42 95 aa7.09□□□□□ -1.27
VPS4B-201ENST00000238497 DFFBO76075 338 aa7.09□□□□□ -1.27
VPS4B-201ENST00000238497 TUBG1P23258 451 aa7.09□□□□□ -1.27
VPS4B-201ENST00000238497 RPL31P62899 125 aaKnown RBP7.09□□□□□ -1.27
VPS4B-201ENST00000238497 UQCC3Q6UW78 93 aa7.09□□□□□ -1.27
VPS4B-201ENST00000238497 CLDND2Q8NHS1 167 aa7.09□□□□□ -1.27
VPS4B-201ENST00000238497 RAB1CQ92928 201 aa7.09□□□□□ -1.27
VPS4B-201ENST00000238497 RPUSD4Q96CM3 377 aaKnown RBP7.09□□□□□ -1.27
VPS4B-201ENST00000238497 SNX22Q96L94 193 aa7.09□□□□□ -1.27
VPS4B-201ENST00000238497 MXRA5Q9NR99 2828 aa7.09□□□□□ -1.27
VPS4B-201ENST00000238497 RBFOX3A6NFN3 312 aa7.09□□□□□ -1.27
VPS4B-201ENST00000238497 PITX3O75364 302 aa7.09□□□□□ -1.27
VPS4B-201ENST00000238497 OR9G9P0C7N8 305 aa7.09□□□□□ -1.27
VPS4B-201ENST00000238497 MORN2Q502X0 79 aa7.09□□□□□ -1.27
VPS4B-201ENST00000238497 MBNL2Q5VZF2 373 aaKnown RBP7.09□□□□□ -1.27
VPS4B-201ENST00000238497 CYB561D1Q8N8Q1 229 aa7.09□□□□□ -1.27
VPS4B-201ENST00000238497 GNPNAT1Q96EK6 184 aaPredicted RBP7.09□□□□□ -1.27
VPS4B-201ENST00000238497 RHOVQ96L33 236 aa7.09□□□□□ -1.27
VPS4B-201ENST00000238497 GINS3Q9BRX5 216 aa7.09□□□□□ -1.27
VPS4B-201ENST00000238497 ENY2Q9NPA8 101 aa7.09□□□□□ -1.27
VPS4B-201ENST00000238497 TANC2Q9HCD6 1990 aa7.09□□□□□ -1.27
VPS4B-201ENST00000238497 hCG_1809904A0A1W2PP81 198 aa7.09□□□□□ -1.28
VPS4B-201ENST00000238497 A0A1W2PR64 198 aa7.09□□□□□ -1.28
VPS4B-201ENST00000238497 A0A1W2PRV1 198 aa7.09□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms