RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 PLAC9Q5JTB6 97 aa11.24□□□□□ -0.61
SYNE2-228ENST00000639659 BTNL8Q6UX41 500 aa11.24□□□□□ -0.61
SYNE2-228ENST00000639659 CLEC19AQ6UXS0 136 aa11.24□□□□□ -0.61
SYNE2-228ENST00000639659 LYG2Q86SG7 212 aa11.24□□□□□ -0.61
SYNE2-228ENST00000639659 FAM89BQ8N5H3 189 aa11.24□□□□□ -0.61
SYNE2-228ENST00000639659 OR56B1Q8NGI3 324 aa11.24□□□□□ -0.61
SYNE2-228ENST00000639659 FYTTD1Q96QD9 318 aaKnown RBP11.24□□□□□ -0.61
SYNE2-228ENST00000639659 MND1Q9BWT6 205 aa11.24□□□□□ -0.61
SYNE2-228ENST00000639659 MLXQ9UH92 298 aa11.24□□□□□ -0.61
SYNE2-228ENST00000639659 FRAS1Q86XX4 4008 aa11.23□□□□□ -0.61
SYNE2-228ENST00000639659 LINC00473A8K010 186 aa11.23□□□□□ -0.61
SYNE2-228ENST00000639659 SLC17A2O00624 439 aa11.23□□□□□ -0.61
SYNE2-228ENST00000639659 FCGR3BO75015 233 aa11.23□□□□□ -0.61
SYNE2-228ENST00000639659 FCGR3AP08637 254 aa11.23□□□□□ -0.61
SYNE2-228ENST00000639659 GNAO1P09471 354 aa11.23□□□□□ -0.61
SYNE2-228ENST00000639659 DUTP33316 252 aaKnown RBP11.23□□□□□ -0.61
SYNE2-228ENST00000639659 CDK10Q15131 360 aa11.23□□□□□ -0.61
SYNE2-228ENST00000639659 MED22Q15528 200 aa11.23□□□□□ -0.61
SYNE2-228ENST00000639659 DEFB135Q30KP9 77 aa11.23□□□□□ -0.61
SYNE2-228ENST00000639659 CEMP1Q6PRD7 247 aaPredicted RBP11.23□□□□□ -0.61
SYNE2-228ENST00000639659 MMD2Q8IY49 270 aa11.23□□□□□ -0.61
SYNE2-228ENST00000639659 UXS1Q8NBZ7 420 aa11.23□□□□□ -0.61
SYNE2-228ENST00000639659 ADTRPQ96IZ2 230 aa11.23□□□□□ -0.61
SYNE2-228ENST00000639659 GFI1Q99684 422 aa11.23□□□□□ -0.61
SYNE2-228ENST00000639659 CABLES2Q9BTV7 478 aa11.23□□□□□ -0.61
SYNE2-228ENST00000639659 TRBV6-7A0A0A0MS04 114 aa11.22□□□□□ -0.61
SYNE2-228ENST00000639659 DENRO43583 198 aaKnown RBP11.22□□□□□ -0.61
SYNE2-228ENST00000639659 UCHL1P09936 223 aa11.22□□□□□ -0.61
SYNE2-228ENST00000639659 PLA2G7Q13093 441 aa11.22□□□□□ -0.61
SYNE2-228ENST00000639659 TM4SF20Q53R12 229 aa11.22□□□□□ -0.61
SYNE2-228ENST00000639659 HES5Q5TA89 166 aa11.22□□□□□ -0.61
SYNE2-228ENST00000639659 LIPKQ5VXJ0 399 aa11.22□□□□□ -0.61
SYNE2-228ENST00000639659 LAIR2Q6ISS4 152 aa11.22□□□□□ -0.61
SYNE2-228ENST00000639659 SLC25A42Q86VD7 318 aa11.22□□□□□ -0.61
SYNE2-228ENST00000639659 VKORC1L1Q8N0U8 176 aa11.22□□□□□ -0.61
SYNE2-228ENST00000639659 TTC9CQ8N5M4 171 aa11.22□□□□□ -0.61
SYNE2-228ENST00000639659 OSR1Q8TAX0 266 aaPredicted RBP11.22□□□□□ -0.61
SYNE2-228ENST00000639659 UBQLN2Q9UHD9 624 aa11.22□□□□□ -0.61
SYNE2-228ENST00000639659 ZNF257Q9Y2Q1 563 aa11.22□□□□□ -0.61
SYNE2-228ENST00000639659 KLK5Q9Y337 293 aaPredicted RBP11.22□□□□□ -0.61
SYNE2-228ENST00000639659 HERC2O95714 4834 aa11.21□□□□□ -0.61
SYNE2-228ENST00000639659 TMEM213A2RRL7 107 aa11.21□□□□□ -0.61
SYNE2-228ENST00000639659 LGALS9O00182 355 aa11.21□□□□□ -0.61
SYNE2-228ENST00000639659 NDUFB8O95169 186 aa11.21□□□□□ -0.61
SYNE2-228ENST00000639659 ANKRD55Q3KP44 614 aa11.21□□□□□ -0.61
SYNE2-228ENST00000639659 FAM106AQ4KMX7 169 aa11.21□□□□□ -0.61
SYNE2-228ENST00000639659 FAM209BQ5JX69 171 aa11.21□□□□□ -0.61
SYNE2-228ENST00000639659 RBPMS2Q6ZRY4 209 aaKnown RBP11.21□□□□□ -0.61
SYNE2-228ENST00000639659 KCTD9Q7L273 389 aa11.21□□□□□ -0.61
SYNE2-228ENST00000639659 OR1L6Q8NGR2 347 aa11.21□□□□□ -0.61
SYNE2-228ENST00000639659 UFD1Q92890 307 aa11.21□□□□□ -0.61
SYNE2-228ENST00000639659 FAM3DQ96BQ1 224 aa11.21□□□□□ -0.61
SYNE2-228ENST00000639659 RAB3CQ96E17 227 aa11.21□□□□□ -0.61
SYNE2-228ENST00000639659 CCDC140Q96MF4 163 aa11.21□□□□□ -0.61
SYNE2-228ENST00000639659 TMEM272A0A1B0GTI8 110 aa11.2□□□□□ -0.62
SYNE2-228ENST00000639659 PTGES3LE9PB15 166 aa11.2□□□□□ -0.62
SYNE2-228ENST00000639659 RAB27BO00194 218 aa11.2□□□□□ -0.62
SYNE2-228ENST00000639659 SPRY2O43597 315 aa11.2□□□□□ -0.62
SYNE2-228ENST00000639659 REG1AP05451 166 aa11.2□□□□□ -0.62
SYNE2-228ENST00000639659 HSMCR30P0CW71 290 aa11.2□□□□□ -0.62
SYNE2-228ENST00000639659 GNB3P16520 340 aa11.2□□□□□ -0.62
SYNE2-228ENST00000639659 CRHBPP24387 322 aa11.2□□□□□ -0.62
SYNE2-228ENST00000639659 MAP2K4P45985 399 aa11.2□□□□□ -0.62
SYNE2-228ENST00000639659 RPL27AP46776 148 aaKnown RBP11.2□□□□□ -0.62
SYNE2-228ENST00000639659 APOC4P55056 127 aa11.2□□□□□ -0.62
SYNE2-228ENST00000639659 RPS25P62851 125 aaKnown RBP11.2□□□□□ -0.62
SYNE2-228ENST00000639659 ARFRP1Q13795 201 aa11.2□□□□□ -0.62
SYNE2-228ENST00000639659 SPHARQ15513 63 aa11.2□□□□□ -0.62
SYNE2-228ENST00000639659 C2orf76Q3KRA6 126 aa11.2□□□□□ -0.62
SYNE2-228ENST00000639659 EEF1AKMT3Q96AZ1 226 aa11.2□□□□□ -0.62
SYNE2-228ENST00000639659 MRPS7Q9Y2R9 242 aaKnown RBP11.2□□□□□ -0.62
SYNE2-228ENST00000639659 DMRT1Q9Y5R6 373 aa11.2□□□□□ -0.62
SYNE2-228ENST00000639659 IGHV3-35A0A0C4DH35 117 aa11.19□□□□□ -0.62
SYNE2-228ENST00000639659 CDK1P06493 297 aa11.19□□□□□ -0.62
SYNE2-228ENST00000639659 DEFA4P12838 97 aa11.19□□□□□ -0.62
SYNE2-228ENST00000639659 AREGP15514 252 aa11.19□□□□□ -0.62
SYNE2-228ENST00000639659 CALRP27797 417 aaKnown RBP11.19□□□□□ -0.62
SYNE2-228ENST00000639659 TALDO1P37837 337 aa11.19□□□□□ -0.62
SYNE2-228ENST00000639659 ZNF585BQ52M93 769 aa11.19□□□□□ -0.62
SYNE2-228ENST00000639659 OR4A47Q6IF82 309 aa11.19□□□□□ -0.62
SYNE2-228ENST00000639659 GPHB5Q86YW7 130 aa11.19□□□□□ -0.62
SYNE2-228ENST00000639659 PLCXD1Q9NUJ7 323 aa11.19□□□□□ -0.62
SYNE2-228ENST00000639659 KCNK7Q9Y2U2 307 aa11.19□□□□□ -0.62
SYNE2-228ENST00000639659 PRELID3BQ9Y3B1 194 aa11.19□□□□□ -0.62
SYNE2-228ENST00000639659 TEX22C9J3V5 150 aa11.18□□□□□ -0.62
SYNE2-228ENST00000639659 ARL6IP5O75915 188 aa11.18□□□□□ -0.62
SYNE2-228ENST00000639659 RPL35AP18077 110 aaKnown RBP11.18□□□□□ -0.62
SYNE2-228ENST00000639659 GADD45AP24522 165 aa11.18□□□□□ -0.62
SYNE2-228ENST00000639659 BMI1P35226 326 aa11.18□□□□□ -0.62
SYNE2-228ENST00000639659 TNFRSF9Q07011 255 aa11.18□□□□□ -0.62
SYNE2-228ENST00000639659 UNQ9165/PRO28630Q6UXU0 137 aa11.18□□□□□ -0.62
SYNE2-228ENST00000639659 SSX9Q7RTT3 188 aa11.18□□□□□ -0.62
SYNE2-228ENST00000639659 H1FOOQ8IZA3 346 aaPredicted RBP11.18□□□□□ -0.62
SYNE2-228ENST00000639659 SLC38A6Q8IZM9 456 aa11.18□□□□□ -0.62
SYNE2-228ENST00000639659 PACRGLQ8N7B6 248 aa11.18□□□□□ -0.62
SYNE2-228ENST00000639659 TCTEX1D2Q8WW35 142 aa11.18□□□□□ -0.62
SYNE2-228ENST00000639659 OR51E2Q9H255 320 aa11.18□□□□□ -0.62
SYNE2-228ENST00000639659 FKBP14Q9NWM8 211 aa11.18□□□□□ -0.62
SYNE2-228ENST00000639659 RAB22AQ9UL26 194 aa11.18□□□□□ -0.62
SYNE2-228ENST00000639659 MFSD2BA6NFX1 497 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms