RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 RBM7Q9Y580 266 aaKnown RBP14.59□□□□□ -0.07
CLN3-262ENST00000637699 TRBV9A0A0B4J1U6 114 aa14.58□□□□□ -0.08
CLN3-262ENST00000637699 SLC17A2O00624 439 aa14.58□□□□□ -0.08
CLN3-262ENST00000637699 ARL6IP5O75915 188 aa14.58□□□□□ -0.08
CLN3-262ENST00000637699 CRYZL1O95825 349 aa14.58□□□□□ -0.08
CLN3-262ENST00000637699 GSTT2P0CG29 244 aa14.58□□□□□ -0.08
CLN3-262ENST00000637699 GSTT2BP0CG30 244 aa14.58□□□□□ -0.08
CLN3-262ENST00000637699 PSMA1P25786 263 aaKnown RBP14.58□□□□□ -0.08
CLN3-262ENST00000637699 CALRP27797 417 aaKnown RBP14.58□□□□□ -0.08
CLN3-262ENST00000637699 CLDN12P56749 244 aa14.58□□□□□ -0.08
CLN3-262ENST00000637699 RAB11BQ15907 218 aa14.58□□□□□ -0.08
CLN3-262ENST00000637699 ACOT13Q9NPJ3 140 aa14.58□□□□□ -0.08
CLN3-262ENST00000637699 ZC4H2Q9NQZ6 224 aa14.58□□□□□ -0.08
CLN3-262ENST00000637699 OR2J3O76001 311 aa14.57□□□□□ -0.08
CLN3-262ENST00000637699 OR2C1O95371 312 aa14.57□□□□□ -0.08
CLN3-262ENST00000637699 MRPS15P82914 257 aaKnown RBP14.57□□□□□ -0.08
CLN3-262ENST00000637699 NECAP1Q8NC96 275 aa14.57□□□□□ -0.08
CLN3-262ENST00000637699 OR56B1Q8NGI3 324 aa14.57□□□□□ -0.08
CLN3-262ENST00000637699 ZNF430Q9H8G1 570 aaPredicted RBP14.57□□□□□ -0.08
CLN3-262ENST00000637699 TECRQ9NZ01 308 aaKnown RBP14.57□□□□□ -0.08
CLN3-262ENST00000637699 BLOC1S6Q9UL45 172 aa14.57□□□□□ -0.08
CLN3-262ENST00000637699 TRBV6-7A0A0A0MS04 114 aa14.56□□□□□ -0.08
CLN3-262ENST00000637699 CXorf65A6NEN9 183 aa14.56□□□□□ -0.08
CLN3-262ENST00000637699 ACTL6BO94805 426 aa14.56□□□□□ -0.08
CLN3-262ENST00000637699 PMS2P11Q13670 270 aa14.56□□□□□ -0.08
CLN3-262ENST00000637699 C15orf32Q32M92 178 aa14.56□□□□□ -0.08
CLN3-262ENST00000637699 C10orf55Q5SWW7 151 aa14.56□□□□□ -0.08
CLN3-262ENST00000637699 ZNF367Q7RTV3 350 aa14.56□□□□□ -0.08
CLN3-262ENST00000637699 SLC16A13Q7RTY0 426 aa14.56□□□□□ -0.08
CLN3-262ENST00000637699 CACNG8Q8WXS5 425 aa14.56□□□□□ -0.08
CLN3-262ENST00000637699 MAFIPQ8WZ33 124 aa14.56□□□□□ -0.08
CLN3-262ENST00000637699 DDB2Q92466 427 aa14.56□□□□□ -0.08
CLN3-262ENST00000637699 SPIN2AQ99865 258 aa14.56□□□□□ -0.08
CLN3-262ENST00000637699 SPIN2BQ9BPZ2 258 aa14.56□□□□□ -0.08
CLN3-262ENST00000637699 OVOL2Q9BRP0 275 aa14.56□□□□□ -0.08
CLN3-262ENST00000637699 CABLES2Q9BTV7 478 aa14.56□□□□□ -0.08
CLN3-262ENST00000637699 ST6GALNAC5Q9BVH7 336 aa14.56□□□□□ -0.08
CLN3-262ENST00000637699 DMRT1Q9Y5R6 373 aa14.56□□□□□ -0.08
CLN3-262ENST00000637699 LINC00473A8K010 186 aa14.55□□□□□ -0.08
CLN3-262ENST00000637699 DENRO43583 198 aaKnown RBP14.55□□□□□ -0.08
CLN3-262ENST00000637699 GGCTO75223 188 aaKnown RBP14.55□□□□□ -0.08
CLN3-262ENST00000637699 FCGR3AP08637 254 aa14.55□□□□□ -0.08
CLN3-262ENST00000637699 DUTP33316 252 aaKnown RBP14.55□□□□□ -0.08
CLN3-262ENST00000637699 PLA2G7Q13093 441 aa14.55□□□□□ -0.08
CLN3-262ENST00000637699 C2orf76Q3KRA6 126 aa14.55□□□□□ -0.08
CLN3-262ENST00000637699 TTC9CQ8N5M4 171 aa14.55□□□□□ -0.08
CLN3-262ENST00000637699 FAM3DQ96BQ1 224 aa14.55□□□□□ -0.08
CLN3-262ENST00000637699 ADTRPQ96IZ2 230 aa14.55□□□□□ -0.08
CLN3-262ENST00000637699 KCNK7Q9Y2U2 307 aa14.55□□□□□ -0.08
CLN3-262ENST00000637699 SAA1P0DJI8 122 aaPredicted RBP14.54□□□□□ -0.08
CLN3-262ENST00000637699 CBLN1P23435 193 aa14.54□□□□□ -0.08
CLN3-262ENST00000637699 OSR1Q8TAX0 266 aaPredicted RBP14.54□□□□□ -0.08
CLN3-262ENST00000637699 GINS4Q9BRT9 223 aa14.54□□□□□ -0.08
CLN3-262ENST00000637699 DCUN1D5Q9BTE7 237 aa14.54□□□□□ -0.08
CLN3-262ENST00000637699 GGTLC1Q9BX51 225 aa14.54□□□□□ -0.08
CLN3-262ENST00000637699 NDUFB11Q9NX14 153 aa14.54□□□□□ -0.08
CLN3-262ENST00000637699 V9GY05 133 aa14.54□□□□□ -0.08
CLN3-262ENST00000637699 HMX3A6NHT5 357 aa14.53□□□□□ -0.08
CLN3-262ENST00000637699 LGALS9O00182 355 aa14.53□□□□□ -0.08
CLN3-262ENST00000637699 IGHV3-23P01764 117 aa14.53□□□□□ -0.08
CLN3-262ENST00000637699 GABARAPL2P60520 117 aa14.53□□□□□ -0.08
CLN3-262ENST00000637699 CDK10Q15131 360 aa14.53□□□□□ -0.08
CLN3-262ENST00000637699 HES5Q5TA89 166 aa14.53□□□□□ -0.08
CLN3-262ENST00000637699 C19orf35Q6ZS72 473 aa14.53□□□□□ -0.08
CLN3-262ENST00000637699 MMD2Q8IY49 270 aa14.53□□□□□ -0.08
CLN3-262ENST00000637699 TMEM61Q8N0U2 210 aa14.53□□□□□ -0.08
CLN3-262ENST00000637699 OR52B4Q8NGK2 314 aa14.53□□□□□ -0.08
CLN3-262ENST00000637699 RAB3CQ96E17 227 aa14.53□□□□□ -0.08
CLN3-262ENST00000637699 FBXL7Q9UJT9 491 aa14.53□□□□□ -0.08
CLN3-262ENST00000637699 DNAH10Q8IVF4 4471 aa14.53□□□□□ -0.08
CLN3-262ENST00000637699 LOC102724200A0A096LPH7 203 aaPredicted RBP14.52□□□□□ -0.09
CLN3-262ENST00000637699 TMEM272A0A1B0GTI8 110 aa14.52□□□□□ -0.09
CLN3-262ENST00000637699 ZNF320A2RRD8 509 aa14.52□□□□□ -0.09
CLN3-262ENST00000637699 J3QRK9 145 aa14.52□□□□□ -0.09
CLN3-262ENST00000637699 CREBL2O60519 120 aaPredicted RBP14.52□□□□□ -0.09
CLN3-262ENST00000637699 SCAF4O95104 1147 aaKnown RBP14.52□□□□□ -0.09
CLN3-262ENST00000637699 OR10A3P58181 314 aa14.52□□□□□ -0.09
CLN3-262ENST00000637699 FAM209BQ5JX69 171 aa14.52□□□□□ -0.09
CLN3-262ENST00000637699 ZNF57Q68EA5 555 aaPredicted RBP14.52□□□□□ -0.09
CLN3-262ENST00000637699 SLC25A42Q86VD7 318 aa14.52□□□□□ -0.09
CLN3-262ENST00000637699 GPHB5Q86YW7 130 aa14.52□□□□□ -0.09
CLN3-262ENST00000637699 MLXQ9UH92 298 aa14.52□□□□□ -0.09
CLN3-262ENST00000637699 S4R3C0 116 aa14.52□□□□□ -0.09
CLN3-262ENST00000637699 KMT2AQ03164 3969 aa14.51□□□□□ -0.09
CLN3-262ENST00000637699 A0A075B6Q4 140 aa14.51□□□□□ -0.09
CLN3-262ENST00000637699 TRAV1-2A0A0B4J238 106 aa14.51□□□□□ -0.09
CLN3-262ENST00000637699 TRDV1A0A1B0GX56 115 aa14.51□□□□□ -0.09
CLN3-262ENST00000637699 FCGR3BO75015 233 aa14.51□□□□□ -0.09
CLN3-262ENST00000637699 GNB3P16520 340 aa14.51□□□□□ -0.09
CLN3-262ENST00000637699 ARL3P36405 182 aa14.51□□□□□ -0.09
CLN3-262ENST00000637699 PSMD7P51665 324 aa14.51□□□□□ -0.09
CLN3-262ENST00000637699 CLEC19AQ6UXS0 136 aa14.51□□□□□ -0.09
CLN3-262ENST00000637699 SPARTQ8N0X7 666 aa14.51□□□□□ -0.09
CLN3-262ENST00000637699 RAB22AQ9UL26 194 aa14.51□□□□□ -0.09
CLN3-262ENST00000637699 ZNF257Q9Y2Q1 563 aa14.51□□□□□ -0.09
CLN3-262ENST00000637699 HERC2O95714 4834 aa14.51□□□□□ -0.09
CLN3-262ENST00000637699 A0A0J9YWU9 116 aa14.5□□□□□ -0.09
CLN3-262ENST00000637699 MRPS14O60783 128 aaKnown RBP14.5□□□□□ -0.09
CLN3-262ENST00000637699 NDUFB8O95169 186 aa14.5□□□□□ -0.09
CLN3-262ENST00000637699 DIRAS3O95661 229 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms