RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 TMEM252Q8N6L7 170 aa13.68□□□□□ -0.22
CLN3-252ENST00000636907 STOML3Q8TAV4 291 aa13.68□□□□□ -0.22
CLN3-252ENST00000636907 QTRT1Q9BXR0 403 aaKnown RBP13.68□□□□□ -0.22
CLN3-252ENST00000636907 MMP26Q9NRE1 261 aa13.68□□□□□ -0.22
CLN3-252ENST00000636907 IGHV2-70DA0A0C4DH43 119 aa13.67□□□□□ -0.22
CLN3-252ENST00000636907 SRRM4A7MD48 611 aaKnown RBP13.67□□□□□ -0.22
CLN3-252ENST00000636907 H3BP45 60 aa13.67□□□□□ -0.22
CLN3-252ENST00000636907 H7C2Y5 167 aa13.67□□□□□ -0.22
CLN3-252ENST00000636907 PAX1P15863 534 aa13.67□□□□□ -0.22
CLN3-252ENST00000636907 RPL23AP62750 156 aaKnown RBP13.67□□□□□ -0.22
CLN3-252ENST00000636907 KLRD1Q13241 179 aa13.67□□□□□ -0.22
CLN3-252ENST00000636907 ZNF787Q6DD87 383 aa13.67□□□□□ -0.22
CLN3-252ENST00000636907 RPL7L1Q6DKI1 246 aaKnown RBP13.67□□□□□ -0.22
CLN3-252ENST00000636907 OR4A47Q6IF82 309 aa13.67□□□□□ -0.22
CLN3-252ENST00000636907 HCP5Q6MZN7 132 aa13.67□□□□□ -0.22
CLN3-252ENST00000636907 C1orf122Q6ZSJ8 110 aa13.67□□□□□ -0.22
CLN3-252ENST00000636907 OR11H6Q8NGC7 330 aa13.67□□□□□ -0.22
CLN3-252ENST00000636907 OR4A16Q8NH70 328 aa13.67□□□□□ -0.22
CLN3-252ENST00000636907 SCARB1Q8WTV0 552 aa13.67□□□□□ -0.22
CLN3-252ENST00000636907 PCGF1Q9BSM1 259 aa13.67□□□□□ -0.22
CLN3-252ENST00000636907 SLC25A31Q9H0C2 315 aa13.67□□□□□ -0.22
CLN3-252ENST00000636907 WSB1Q9Y6I7 421 aa13.67□□□□□ -0.22
CLN3-252ENST00000636907 IGHV4-61A0A0C4DH41 118 aa13.66□□□□□ -0.22
CLN3-252ENST00000636907 TPT1P13693 172 aaKnown RBP13.66□□□□□ -0.22
CLN3-252ENST00000636907 AARDQ4LEZ3 155 aa13.66□□□□□ -0.22
CLN3-252ENST00000636907 TMEM177Q53S58 311 aa13.66□□□□□ -0.22
CLN3-252ENST00000636907 SLC7A5P1Q8MH63 180 aa13.66□□□□□ -0.22
CLN3-252ENST00000636907 WFDC1Q9HC57 220 aa13.66□□□□□ -0.22
CLN3-252ENST00000636907 PSENENQ9NZ42 101 aa13.66□□□□□ -0.22
CLN3-252ENST00000636907 AMMECR1Q9Y4X0 333 aaPredicted RBP13.66□□□□□ -0.22
CLN3-252ENST00000636907 KPTNQ9Y664 436 aa13.66□□□□□ -0.22
CLN3-252ENST00000636907 IGHV4-30-2A0A087WSY4 118 aa13.66□□□□□ -0.22
CLN3-252ENST00000636907 FAM157AC9JC47 383 aa13.66□□□□□ -0.22
CLN3-252ENST00000636907 SHOXO15266 292 aa13.66□□□□□ -0.22
CLN3-252ENST00000636907 TXNL1O43396 289 aa13.66□□□□□ -0.22
CLN3-252ENST00000636907 MED6O75586 246 aa13.66□□□□□ -0.22
CLN3-252ENST00000636907 ARG1P05089 322 aa13.66□□□□□ -0.22
CLN3-252ENST00000636907 KRTAP10-9P60411 292 aa13.66□□□□□ -0.22
CLN3-252ENST00000636907 VMO1Q7Z5L0 202 aa13.66□□□□□ -0.22
CLN3-252ENST00000636907 PDPNQ86YL7 162 aa13.66□□□□□ -0.22
CLN3-252ENST00000636907 OSR1Q8TAX0 266 aaPredicted RBP13.66□□□□□ -0.22
CLN3-252ENST00000636907 PCNPQ8WW12 178 aaKnown RBP13.66□□□□□ -0.22
CLN3-252ENST00000636907 LHX4Q969G2 390 aa13.66□□□□□ -0.22
CLN3-252ENST00000636907 SMIM8Q96KF7 97 aa13.66□□□□□ -0.22
CLN3-252ENST00000636907 GSX2Q9BZM3 304 aa13.66□□□□□ -0.22
CLN3-252ENST00000636907 SIRPDQ9H106 197 aa13.66□□□□□ -0.22
CLN3-252ENST00000636907 TACC2O95359 2948 aa13.65□□□□□ -0.22
CLN3-252ENST00000636907 LY6LH3BQJ8 138 aa13.65□□□□□ -0.22
CLN3-252ENST00000636907 FOXH1O75593 365 aa13.65□□□□□ -0.22
CLN3-252ENST00000636907 IL6RP08887 468 aaPredicted RBP13.65□□□□□ -0.22
CLN3-252ENST00000636907 SPINK9Q5DT21 86 aa13.65□□□□□ -0.22
CLN3-252ENST00000636907 LDLRAD2Q5SZI1 272 aa13.65□□□□□ -0.22
CLN3-252ENST00000636907 BAP18Q8IXM2 172 aa13.65□□□□□ -0.22
CLN3-252ENST00000636907 ZDHHC16Q969W1 377 aa13.65□□□□□ -0.22
CLN3-252ENST00000636907 MARVELD3Q96A59 401 aa13.65□□□□□ -0.22
CLN3-252ENST00000636907 FLYWCH2Q96CP2 140 aaKnown RBP13.65□□□□□ -0.22
CLN3-252ENST00000636907 HARBI1Q96MB7 349 aa13.65□□□□□ -0.22
CLN3-252ENST00000636907 WASHC3Q9Y3C0 194 aa13.65□□□□□ -0.22
CLN3-252ENST00000636907 CRYBG3Q68DQ2 2970 aa13.65□□□□□ -0.22
CLN3-252ENST00000636907 RPS10-NUDT3A0A1W2PQS6 291 aa13.64□□□□□ -0.23
CLN3-252ENST00000636907 C15orf61A6NNL5 157 aa13.64□□□□□ -0.23
CLN3-252ENST00000636907 ODF3BA8MYP8 253 aa13.64□□□□□ -0.23
CLN3-252ENST00000636907 CST7O76096 145 aa13.64□□□□□ -0.23
CLN3-252ENST00000636907 GAPDHP04406 335 aaKnown RBP13.64□□□□□ -0.23
CLN3-252ENST00000636907 TAS2R30P59541 319 aa13.64□□□□□ -0.23
CLN3-252ENST00000636907 BAXQ07812 192 aa13.64□□□□□ -0.23
CLN3-252ENST00000636907 TMEM267Q0VDI3 215 aaPredicted RBP13.64□□□□□ -0.23
CLN3-252ENST00000636907 NDUFA5Q16718 116 aa13.64□□□□□ -0.23
CLN3-252ENST00000636907 PDZD9Q8IXQ8 264 aa13.64□□□□□ -0.23
CLN3-252ENST00000636907 DTD1Q8TEA8 209 aa13.64□□□□□ -0.23
CLN3-252ENST00000636907 PHYHIPLQ96FC7 376 aa13.64□□□□□ -0.23
CLN3-252ENST00000636907 UNKLQ9H9P5 680 aaKnown RBP13.64□□□□□ -0.23
CLN3-252ENST00000636907 IGHV3-72A0A0B4J1Y9 119 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 IGHV1-3A0A0C4DH29 117 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 CEBPZOSA8MTT3 80 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 ATP6V1G1O75348 118 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 IFNA17P01571 189 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 SAA1P0DJI8 122 aaPredicted RBP13.63□□□□□ -0.23
CLN3-252ENST00000636907 HOXB4P17483 251 aaPredicted RBP13.63□□□□□ -0.23
CLN3-252ENST00000636907 MC5RP33032 325 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 RAB13P51153 203 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 DYNLT3P51808 116 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 ZNF429Q86V71 674 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 TMEM217Q8N7C4 229 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 OR4C13Q8NGP0 309 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 OR52E5Q8NH55 327 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 RPEQ96AT9 228 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 AIFM2Q9BRQ8 373 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 LPAR2Q9HBW0 351 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 INSIG2Q9Y5U4 225 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 FBN2P35556 2912 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 USP9YO00507 2555 aaPredicted RBP13.63□□□□□ -0.23
CLN3-252ENST00000636907 TENM4Q6N022 2769 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 RNASEK-C17orf49H0YIS7 233 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 UPK2O00526 184 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 JTBO76095 146 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 HTR1DP28221 377 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 SULT1A1P50225 295 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 SPCS3P61009 180 aa13.63□□□□□ -0.23
CLN3-252ENST00000636907 RPS16P62249 146 aaKnown RBP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms