RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 DBX1A6NMT0 343 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 H0Y980 276 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 LY6LH3BQJ8 138 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 CCSO14618 274 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 GOSR2O14653 212 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 WIPF1O43516 503 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 PFDN1O60925 122 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 SAA2P0DJI9 122 aaPredicted RBP10.09□□□□□ -0.79
PNKP-217ENST00000625216 F2RP25116 425 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 CD83Q01151 205 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 DEFA6Q01524 100 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 TPTE2P1Q5T6R2 138 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 LYG1Q8N1E2 194 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 LINC00311Q8N616 119 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 C8orf31Q8N9H6 132 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 UXS1Q8NBZ7 420 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 ZBTB34Q8NCN2 500 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 COQ8AQ8NI60 647 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 GLYATL2Q8WU03 294 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 ST6GAL2Q96JF0 529 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 PHB2Q99623 299 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 ZNF251Q9BRH9 671 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 WNT10AQ9GZT5 417 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 SHPKQ9UHJ6 478 aa10.09□□□□□ -0.79
PNKP-217ENST00000625216 LINC00473A8K010 186 aa10.08□□□□□ -0.8
PNKP-217ENST00000625216 J3QR06 171 aa10.08□□□□□ -0.8
PNKP-217ENST00000625216 M0QZK8 103 aa10.08□□□□□ -0.8
PNKP-217ENST00000625216 M0R1X1 148 aa10.08□□□□□ -0.8
PNKP-217ENST00000625216 SLC22A5O76082 557 aa10.08□□□□□ -0.8
PNKP-217ENST00000625216 SIX6O95475 246 aa10.08□□□□□ -0.8
PNKP-217ENST00000625216 TSPAN15O95858 294 aa10.08□□□□□ -0.8
PNKP-217ENST00000625216 UCP1P25874 307 aa10.08□□□□□ -0.8
PNKP-217ENST00000625216 S100GP29377 79 aa10.08□□□□□ -0.8
PNKP-217ENST00000625216 LINC00205P59089 165 aa10.08□□□□□ -0.8
PNKP-217ENST00000625216 BLCAPP62952 87 aa10.08□□□□□ -0.8
PNKP-217ENST00000625216 ARSJQ5FYB0 599 aaPredicted RBP10.08□□□□□ -0.8
PNKP-217ENST00000625216 KCTD9Q7L273 389 aa10.08□□□□□ -0.8
PNKP-217ENST00000625216 THNSL2Q86YJ6 484 aa10.08□□□□□ -0.8
PNKP-217ENST00000625216 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.08□□□□□ -0.8
PNKP-217ENST00000625216 FAM110DQ8TAY7 271 aaPredicted RBP10.08□□□□□ -0.8
PNKP-217ENST00000625216 WDR89Q96FK6 387 aaPredicted RBP10.08□□□□□ -0.8
PNKP-217ENST00000625216 RANGRFQ9HD47 186 aaPredicted RBP10.08□□□□□ -0.8
PNKP-217ENST00000625216 GAB2Q9UQC2 676 aa10.08□□□□□ -0.8
PNKP-217ENST00000625216 KCNAB3O43448 404 aa10.07□□□□□ -0.8
PNKP-217ENST00000625216 FBXO24O75426 580 aa10.07□□□□□ -0.8
PNKP-217ENST00000625216 ADAP1O75689 374 aa10.07□□□□□ -0.8
PNKP-217ENST00000625216 CCNKO75909 580 aa10.07□□□□□ -0.8
PNKP-217ENST00000625216 OR2F2O95006 317 aa10.07□□□□□ -0.8
PNKP-217ENST00000625216 FAM106CPP0CH98 169 aa10.07□□□□□ -0.8
PNKP-217ENST00000625216 ANXA3P12429 323 aa10.07□□□□□ -0.8
PNKP-217ENST00000625216 DUTP33316 252 aaKnown RBP10.07□□□□□ -0.8
PNKP-217ENST00000625216 VDAC2P45880 294 aaPredicted RBP10.07□□□□□ -0.8
PNKP-217ENST00000625216 HABP2Q14520 560 aaPredicted RBP10.07□□□□□ -0.8
PNKP-217ENST00000625216 ZNF66Q6ZN08 573 aa10.07□□□□□ -0.8
PNKP-217ENST00000625216 OR5M8Q8NGP6 311 aa10.07□□□□□ -0.8
PNKP-217ENST00000625216 WIPF2Q8TF74 440 aaPredicted RBP10.07□□□□□ -0.8
PNKP-217ENST00000625216 TCTEX1D2Q8WW35 142 aa10.07□□□□□ -0.8
PNKP-217ENST00000625216 RPEQ96AT9 228 aa10.07□□□□□ -0.8
PNKP-217ENST00000625216 RBM14Q96PK6 669 aaKnown RBP10.07□□□□□ -0.8
PNKP-217ENST00000625216 FYTTD1Q96QD9 318 aaKnown RBP10.07□□□□□ -0.8
PNKP-217ENST00000625216 TMEM222Q9H0R3 208 aa10.07□□□□□ -0.8
PNKP-217ENST00000625216 LIN7CQ9NUP9 197 aaKnown RBP10.07□□□□□ -0.8
PNKP-217ENST00000625216 PIPOXQ9P0Z9 390 aa10.07□□□□□ -0.8
PNKP-217ENST00000625216 KCNIP3Q9Y2W7 256 aa10.07□□□□□ -0.8
PNKP-217ENST00000625216 FAM90A9PA6NNJ1 464 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 BOLA2-SMG1P6H3BVE0 249 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 RAB29O14966 203 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 IGKV1-39P01597 117 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 OPN1MWP04001 364 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 IGKV1D-39P04432 117 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 OPN1MW2P0DN77 364 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 OPN1MW3P0DN78 364 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 HLA-GP17693 338 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 ZNF137PP52743 207 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 H2BFSP57053 126 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 BRWD1-AS2P59051 145 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 CATR1Q13166 79 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 DIAPH2-AS1Q14236 149 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 ZNF585BQ52M93 769 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 OR2B11Q5JQS5 317 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 ZNF833PQ6ZTB9 187 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 NDUFA11Q86Y39 141 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 LGI3Q8N145 548 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 OR8H3Q8N146 312 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 C11orf44Q8N8P7 122 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 LRTM2Q8N967 370 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 DRAXINQ8NBI3 349 aaPredicted RBP10.06□□□□□ -0.8
PNKP-217ENST00000625216 HSD17B10Q99714 261 aaKnown RBP10.06□□□□□ -0.8
PNKP-217ENST00000625216 SLC25A33Q9BSK2 321 aa10.06□□□□□ -0.8
PNKP-217ENST00000625216 NOTCH1P46531 2555 aa10.05□□□□□ -0.8
PNKP-217ENST00000625216 MPTX1A8MV57 137 aa10.05□□□□□ -0.8
PNKP-217ENST00000625216 HOXB5P09067 269 aa10.05□□□□□ -0.8
PNKP-217ENST00000625216 CD24P25063 80 aa10.05□□□□□ -0.8
PNKP-217ENST00000625216 SRPXP78539 464 aa10.05□□□□□ -0.8
PNKP-217ENST00000625216 PDLIM3Q53GG5 364 aaPredicted RBP10.05□□□□□ -0.8
PNKP-217ENST00000625216 TMEM268Q5VZI3 342 aa10.05□□□□□ -0.8
PNKP-217ENST00000625216 Q6ZS46 218 aa10.05□□□□□ -0.8
PNKP-217ENST00000625216 SELENOHQ8IZQ5 122 aaKnown RBP10.05□□□□□ -0.8
PNKP-217ENST00000625216 SLC35G3Q8N808 338 aa10.05□□□□□ -0.8
PNKP-217ENST00000625216 ZNF383Q8NA42 475 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms